Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 102 7e-17 seq6 100 2e-16 >seq1 Length=3205512 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||| ||| || || | || || ||||| ||||||||||| Sbjct 2258164 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAA 2258105 Query 39153 TATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 ||||| ||||| || | ||||||| | || ||| || ||| ||| ||| ||||| Sbjct 2258104 AATAAGGCGCTGTTGATCCGGTGGG-ATGCCCTCCTTATCCTGGATCTTCGCTTTGACAT 2258046 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||| || |||| ||||| | || || ||||| ||||| | Sbjct 2258045 TATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCA 2257986 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 2257985 CAAAGATCTGCAT 2257973 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 39076 ACCAA-ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || ||| || || ||||| ||||| | ||| || || | || || Sbjct 2257617 ACCAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTC 2257558 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||| || || || ||||||||||||||||||| || | | ||| |||||| Sbjct 2257557 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2257498 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || ||| |||| | | | || || |||||||| || | ||||| | || Sbjct 2257497 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2257438 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || || ||||| ||||| Sbjct 2257437 GCCCGTCAATGTCTTGACGAAGATCTGCAT 2257408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 ||| ||| || ||||||||||| || || || ||||| | |||||| || |||| || | Sbjct 2258408 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2258349 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 || ||||||||||| || || || |||||||| | || | || || ||||| | Sbjct 2258348 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2258289 Query 39197 TTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTC 39256 | ||| || | | | | ||| || ||||| || |||| |||||| | || | Sbjct 2258288 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGC 2258229 Query 39257 CCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || ||||| ||||| Sbjct 2258228 CTGTGAGGGTCTTGACGAAGATCTGCAT 2258201 >seq6 Length=2299419 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 39077 CCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAA 39136 ||||||| || || ||| || || || ||||| || | ||| || || |||| || | Sbjct 331409 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 331350 Query 39137 GCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGA 39196 |||| |||||||| || || | ||||||||||| | ||| | || ||| |||||| || Sbjct 331349 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 331290 Query 39197 TTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTC 39256 | || |||| | | | ||| || |||||||| || | |||||| | |||| Sbjct 331289 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 331230 Query 39257 CCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||| || || ||||| ||||| Sbjct 331229 CAGTCAACGTCTTCACGAAGATCTGCAT 331202 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 39075 CACCAAA-TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCAT 39133 |||||| || || |||||||| || || ||||| || || | || || || | || | Sbjct 332198 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCCT 332139 Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193 | ||||| ||||||||||| || || ||||||||||||| || | | || |||||| Sbjct 332138 CGAGCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 332079 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| |||| | | | ||| || ||||| || || | |||||| | | Sbjct 332078 GAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCT 332019 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || || |||||||| ||||| Sbjct 332018 TACCCGTGAGGGTCTTGACAAAGATCTGCAT 331988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545526708782