Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 154 4e-32 seq6 129 1e-24 >seq1 Length=3205512 Score = 154 bits (170), Expect = 4e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| ||||| || ||||| || | |||||||||| | ||||| |||||| || | Sbjct 2257895 CAAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCA 2257836 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 |||||| ||||||||||| | ||||| |||||||| ||||| ||||||||||| || | Sbjct 2257835 ACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 2257776 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| |||||| || || ||||| || | || || || | ||||||||||| | Sbjct 2257775 TCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCC 2257716 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || |||| ||| | ||||| Sbjct 2257715 CTGTCAAGGTCTTTACGAAAATCTGCAT 2257688 Score = 145 bits (160), Expect = 2e-29 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||| || || || || || || |||| ||||||||| | | || | |||||| || | Sbjct 2257615 CAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAA 2257556 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 |||| || |||||||||||||| || || |||||||| || ||||| |||||||| || | Sbjct 2257555 GCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAA 2257496 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| ||| ||||| ||||| || | ||||| || | ||||| ||||||| Sbjct 2257495 TCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGC 2257436 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||| || || | ||| | ||||| Sbjct 2257435 CCGTCAATGTCTTGACGAAGATCTGCAT 2257408 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||||||||| ||||| || || || |||| ||||| |||| | || Sbjct 2258193 CGAAGACGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTC 2258134 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || || || ||||| || ||||| || || || || || Sbjct 2258133 CGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCC 2258074 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || |||||||| || ||| ||||| ||||| || | || || || || Sbjct 2258073 TCCTTATCCTGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAG 2258014 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| |||| ||||| Sbjct 2258013 GTGATGGTCTTGCCAGTCAGGGTTTT 2257988 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 || ||||| ||| ||||| || | |||||||| | | || | || || || | Sbjct 2258406 AGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAAT 2258347 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || || || || || ||||| ||||| ||||| || |||||||||||||| ||| Sbjct 2258346 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2258287 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||||||| ||||| ||||| || | || || || ||||||||||||||||| Sbjct 2258286 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGCCT 2258227 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || || | ||| | ||||| Sbjct 2258226 GTGAGGGTCTTGACGAAGATCTGCAT 2258201 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || ||| || |||||||| ||||| || |||| ||||| || | ||| || Sbjct 2257401 ACGGAGGCGCAAGACGAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGT 2257342 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 | ||||| || ||||| || |||||||| || || |||||||||||||| ||||| Sbjct 2257341 ACGGCCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGTTGTTGGTCGGGAGGAAT 2257285 >seq6 Length=2299419 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 || || ||||| || || || |||| |||||| || | | ||| | ||||| || || Sbjct 331917 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 331858 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || ||||| || || || || ||||| ||||| ||||| |||||||| || ||| Sbjct 331857 TGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 331798 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 ||| |||||| ||||| ||||| || | || || || | ||||||||||||||| Sbjct 331797 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCG 331738 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || | ||| | ||||| Sbjct 331737 GTCAGGGTCTTGACGAAGATCTGCAT 331712 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || | ||||| || || |||| || || |||| | ||| | || || Sbjct 331695 AGGACGAGATGCAAGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGAGTGCGGCCGTCC 331636 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| || ||||| || ||||| ||| Sbjct 331635 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCT 331576 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| ||||| || | || || || | ||| |||||| Sbjct 331575 TGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTC 331516 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | |||||| Sbjct 331515 TTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 331484 Score = 116 bits (128), Expect = 9e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || ||| || || |||| |||||| || | || || | ||||| || | Sbjct 332195 CAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCCTCGA 332136 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| || || || || || || || |||||||| ||||| ||||||||||| || | Sbjct 332135 GCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 332076 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| ||| ||||| ||||| || | || || || | |||||| ||||| | Sbjct 332075 TCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTAC 332016 Query 225686 CCGT 225689 |||| Sbjct 332015 CCGT 332012 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| |||||||| || |||||||| | || || ||||| || || || || ||| Sbjct 331359 CCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCC 331300 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||| ||||| || | ||||| || | |||| Sbjct 331299 TTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTG 331240 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || ||||| || || | ||| | ||||| Sbjct 331239 ATCGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 331202 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 || || ||||| || || || |||| || || || | | || | || || || ||| Sbjct 331120 AGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 331061 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || ||||| || | || || |||||||| || || ||||||||||| || ||| Sbjct 331060 TGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATC 331001 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || ||||||||||| || | ||||| || | ||||||||||| || Sbjct 331000 TTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 330941 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 || | || |||| ||| | ||||| Sbjct 330940 GTGAGGGTCTTTACGAAGATCTGCAT 330915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530986089716