Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 154 1e-32 >seq3 Length=3023347 Score = 154 bits (170), Expect = 1e-32 Identities = 379/570 (66%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 ||||| | ||| |||||||| |||| |||||||| | |||||||||||||||||| Sbjct 1886502 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1886561 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || ||||| || ||||| | ||||| || || ||||| || || | ||||| || || Sbjct 1886562 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1886621 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGC 4717 || ||||| || |||||||| || || ||||| || || | | | |||| | | | Sbjct 1886622 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCGATCG- 1886680 Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777 || || ||||| | | ||||| | | || | ||| ||||| || || || | Sbjct 1886681 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1886740 Query 4778 TATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAG 4834 || | || || || | || | | | | ||| ||| || || || || || Sbjct 1886741 GATCGAATTGAAGAGGAAGTCACGCTGCTGA---GAGTCAGAAATGTAGGTATCGATGAG 1886797 Query 4835 TAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCT 4894 || || |||| || || || ||||| || ||||| ||||| ||||| || | Sbjct 1886798 GAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGCG 1886857 Query 4895 AGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACC 4954 |||| | |||| |||||| | |||| | || || | || ||||| || ||||| Sbjct 1886858 GACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACC 1886917 Query 4955 GTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAG 5014 ||| || |||||||| |||| |||| ||||| || | |||||| | || || Sbjct 1886918 GTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCAG 1886977 Query 5015 ---TTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGA 5071 || ||||||| | | |||||| | | ||| | ||||| ||||||||||| Sbjct 1886978 GTTATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGA 1887037 Query 5072 CGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 || | ||||| |||||||| |||||| Sbjct 1887038 AGCCTGGGCTTTCTTGTACATCTGCCAAAT 1887067 Score = 140 bits (154), Expect = 3e-28 Identities = 369/559 (66%), Gaps = 7/559 (1%) Strand=Plus/Minus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 ||||| || || || || || ||||| || ||||| | || || ||||| || || Sbjct 1888848 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1888789 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || || | ||| ||||| | || | ||| || | ||| || || | ||| || || || Sbjct 1888788 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1888729 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 || ||||| ||||| || || ||||| || || |||||||| | || | | | Sbjct 1888728 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1888669 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 || ||||| || |||||||| || || | || || || ||||| || | Sbjct 1888668 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1888609 Query 4779 ATAGCGTTAAATAATTTACTTT--TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 | ||| | ||| || |||| || | | || ||||| | ||||| || || || | Sbjct 1888608 ACAGCATCAAA-AAGGTACTCGCGTTGCTTAGGGTCCTTGA-TGTAAGTATCGATAAGAA 1888551 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 || || | || || |||||||| || ||| || || ||||| ||||| | | Sbjct 1888550 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1888491 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 | || | | ||||| ||||| | || | || || | ||| ||||| || ||||| | Sbjct 1888490 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATACCAT 1888431 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA--- 5013 || ||| ||||||||||| | ||||| || | ||||| | || | |||| Sbjct 1888430 CAGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1888371 Query 5014 GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073 | || ||||||| | | | |||||| | | || | |||||| | ||||| || |||| Sbjct 1888370 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCAGAAAGACG 1888311 Query 5074 CTTCCGCTTTTTTGTACAT 5092 |||| ||||| |||||||| Sbjct 1888310 CTTCAGCTTTCTTGTACAT 1888292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049527134662