Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 188 1e-42 >seq3 Length=3023347 Score = 188 bits (208), Expect = 1e-42 Identities = 386/571 (68%), Gaps = 16/571 (3%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| |||||||| || | ||||| || | |||||| | |||||||||| Sbjct 1886502 AACAAGAGACAGGCAAAATCTGTGTGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1886561 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | ||| ||||| || || ||||| || ||||| || |||| || |||||||| Sbjct 1886562 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1886621 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 || ||||| || |||||||| || || || || | ||| | | | | | || Sbjct 1886622 GAGAAGAAGATCCCTTCTACCGCTGCGAACGCCACCAACCTCGTGGCAAACGTCGAT-CG 1886680 Query 48312 TTGTGTA----TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 ||| | |||||| | ||||| || | ||||| ||| || || || || || || Sbjct 1886681 TTGATCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1886740 Query 48368 TATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTATTA 48423 || | ||| ||||| |||| | |||| || || ||| ||||| || | Sbjct 1886741 GATCGAATTGAAGAGGAAGTCA----CGCTGCTGAGAGTCAGAAATGTAGGTATCGATGA 1886796 Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 ||| || |||| |||||||| ||||| || ||||| ||||| |||||||| | Sbjct 1886797 GGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATCTGGAATCCATAAAAACAGC 1886856 Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543 |||| | | ||||| || | |||| || || ||| |||||| || || || | Sbjct 1886857 GGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATAC 1886916 Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603 | || ||| ||||||||||| | |||| | || |||| |||||| | ||| Sbjct 1886917 CGTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTATCATTCA 1886976 Query 48604 GTTTA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660 | ||| |||||||| ||||||||| || ||||| | ||||| | |||||||| | Sbjct 1886977 GGTTATTGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACG 1887036 Query 48661 ATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | |||| ||||| || ||||| | ||| || Sbjct 1887037 AAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1887067 Score = 165 bits (182), Expect = 1e-35 Identities = 386/576 (67%), Gaps = 26/576 (5%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| || ||||| || || ||| | || || || | ||| || | ||| || || Sbjct 1888848 AACAACAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1888789 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || ||||| || ||||| || ||||| || || | ||| || |||| |||||||| || Sbjct 1888788 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1888729 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGG-TAAGTCTCTCTCCGTAACTG----G 48306 || ||||| ||||| || || || || || ||| ||| || ||| | || || | Sbjct 1888728 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAA---TCGCTCAGCAAATGTGGAG 1888672 Query 48307 CTTCGTTGTGT-ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 | || | | ||||| ||| ||||||| || |||||| | || ||||| || || || Sbjct 1888671 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTC 1888612 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTAT 48421 || | ||||| ||| ||| | | | ||||| || || | ||||||||| || Sbjct 1888611 TCAACAGCATCAAA----AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGAT 1888556 Query 48422 TAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 | ||| || | ||| ||| |||||||| || || || || ||||| || || Sbjct 1888555 AAGAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCA 1888496 Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTAT 48541 | ||| || | ||| ||||| | | || || ||| | | ||||| || || || Sbjct 1888495 ACGCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGAT 1888436 Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT------TTTTCGTT 48595 |||||| ||||||||||| || | ||||| | ||| | || ||||| Sbjct 1888435 ACCATCAGAGGCAGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTT 1888376 Query 48596 GGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 ||| | ||| ||||||||| | || ||||||||| | || | |||||| || ||||| Sbjct 1888375 --AAGGCGGTT-ATTCCAGTCGTGGAGATCTTTTGACAGGTCCATTTCTTCGGCGGTCCA 1888319 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || || || ||||| || ||||| | ||| || Sbjct 1888318 GAAAGACGCTTCAGCTTTCTTGTACATTTGCCAGAT 1888283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668678432960