Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 178 3e-39 seq6 168 1e-36 seq3 91.5 3e-13 >seq1 Length=3205512 Score = 178 bits (196), Expect = 3e-39 Identities = 154/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| ||||| |||| ||||||||| |||||||| || ||||| || || ||| Sbjct 2257598 TCCTTCTGGATATTGTAATCAGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2257539 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || ||||| || |||||||||||||| || ||||| || || || | Sbjct 2257538 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 2257479 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 |||||||||||||||| || ||||| |||||||| ||||| |||||||| ||||| ||| Sbjct 2257478 TCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGACG 2257419 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 2257418 AAGATCTGCAT 2257408 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || |||||||| || | || || || |||||||| | || || || || ||| Sbjct 2257878 TCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2257819 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| ||||| ||||| ||||| || |||||||| || ||||| || || ||| | Sbjct 2257818 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2257759 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || ||||||||||||| ||||| ||||||||||||||||| || ||||| ||||| ||| Sbjct 2257758 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCTGTCAAGGTCTTTACG 2257699 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 2257698 AAAATCTGCAT 2257688 Score = 159 bits (176), Expect = 7e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 282892 CCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTA 282951 ||||||| | ||||| ||||| || |||||||| || | ||| ||||| || ||||| | Sbjct 2258408 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2258349 Query 282952 GTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGA 283011 ||| || || ||||| |||| ||||| ||||| ||| || || ||||||||||| | Sbjct 2258348 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2258289 Query 283012 TCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTAC 283071 |||| || || || ||||||| |||||||||| || || || | ||||||||||| | Sbjct 2258288 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCTTGC 2258229 Query 283072 CCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||| ||||| |||||||| Sbjct 2258228 CTGTGAGGGTCTTGACGAAGATCTGCAT 2258201 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| || ||||||||||| || || || || ||||| Sbjct 2258163 TCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAA 2258104 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || ||||| || || || |||||||| || |||||||| ||||| || || Sbjct 2258103 ATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACATTA 2258044 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| || | ||||| ||||| || |||| || || || Sbjct 2258043 TCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACA 2257984 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 2257983 AAGATCTGCAT 2257973 Score = 100 bits (110), Expect = 6e-16 Identities = 89/110 (81%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 282994 TACCCT-CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||| ||||||| |||||||| ||||| || | ||||| ||||| |||| || || Sbjct 647064 TACCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAAGACTCCACC 647123 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| ||||||||||| Sbjct 647124 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATTTT 647173 >seq6 Length=2299419 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||| |||||||| | ||| ||||| |||||||| ||||| || ||||| || Sbjct 331902 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAA 331843 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || |||||| ||| |||||||||||||| || |||||||| || ||| | Sbjct 331842 ATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTG 331783 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| ||||| ||||||||||| || |||| ||||| ||| Sbjct 331782 TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACG 331723 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 331722 AAGATCTGCAT 331712 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||| ||||||| ||| |||||||| || || || || || || || ||| Sbjct 331392 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 331333 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || |||||| || || ||||||||||| |||||||| || || ||| || Sbjct 331332 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 331273 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || ||||| ||||||||||| || ||||| ||||| ||| Sbjct 331272 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 331213 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 331212 AAGATCTGCAT 331202 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||| ||||| | ||| |||||||| ||||| || || || || || || Sbjct 331105 TCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAA 331046 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| || ||||| || || || |||||||| || ||||| || || ||| || Sbjct 331045 ATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATCTTCGCCTTGACGTTA 330986 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| |||||||||| || || ||||| ||||||||||| || || | ||||| ||| Sbjct 330985 TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTTACG 330926 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 330925 AAGATCTGCAT 330915 Score = 154 bits (170), Expect = 3e-32 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962 ||||| || || ||||| |||||||||| || ||||| |||||||| || || || || Sbjct 332184 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCCTCGAGCTGCTTGCCC 332125 Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022 ||||| || | || || ||||| ||||| || |||||||| || ||||| || || Sbjct 332124 GCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTG 332065 Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || | ||||| |||||||||| ||||| ||||| ||||| ||||||||||| | ||| Sbjct 332064 ACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTCTTACCCGTGAGGGTC 332005 Query 283083 TTAACGAATATCTGCATT 283100 || || || ||||||||| Sbjct 332004 TTGACAAAGATCTGCATT 331987 >seq3 Length=3023347 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || || ||||||||||| | |||||| | || || ||||| || || || |||||| | Sbjct 1889005 CTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGATCGTCTG 1889064 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 || | || || || ||| || || ||| | | |||||||||| |||||||| Sbjct 1889065 CTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGAC 1889124 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAG 230401 | || || | |||||||| || |||||||| || ||||| || ||||| || ||| Sbjct 1889125 ATGATCTCCTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGTATCGGATTACTCGAAG 1889184 Query 230402 GCCCGGTGT 230410 | ||||||| Sbjct 1889185 G-CCGGTGT 1889192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739012241156