Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 163 7e-35 seq1 154 4e-32 seq8 89.7 1e-12 >seq6 Length=2299419 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||||||||||||||| || ||| Sbjct 330918 CAGATCTTCGTAAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCGGAC 330977 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| ||||||||||| || |||||||| Sbjct 330978 ACCATCGATAACGTCAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCAGCAG 331037 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || |||||||| || || | || ||| | || |||||| || Sbjct 331038 CGTTTGATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAACATC 331097 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || ||||| Sbjct 331098 CAGAAGGAGTCGACTCTTCATCT 331120 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| |||||||| || || ||| Sbjct 331715 CAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCTGAC 331774 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||||||| || || ||||| || |||||||| Sbjct 331775 ACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 331834 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || || ||||| |||||| | |||||| | || || || || Sbjct 331835 CGCCTCATTTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAATATC 331894 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || || || || || ||||| Sbjct 331895 CAGAAGGAGTCGACTCTTCATCT 331917 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || ||||| |||||||| ||||||||||| || ||| Sbjct 331205 CAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCTGAC 331264 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 331265 ACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 331324 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || ||||||||||| || | || ||| | || |||||| | Sbjct 331325 CGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACCCTTTCTGACTATAACATT 331384 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 331385 CAGAAGGAGTCGACCCTCCAT 331405 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || ||||| || |||||||| || || ||| Sbjct 331487 CAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCTGAC 331546 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||| || || || || || || ||||||||||| Sbjct 331547 ACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAGCAG 331606 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || |||||||| || || | ||||| |||| |||||| || Sbjct 331607 CGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTATAACATC 331666 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||||| || Sbjct 331667 CAGAAGGAGTCCACCTTGCATCTCGT 331692 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || ||||| |||||||| || || ||| Sbjct 331991 CAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTCGAGGTCGAGTCTTCGGAC 332050 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct 332051 ACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAGCAG 332110 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || |||||||| ||||| | || || | || || || || Sbjct 332111 CGCCTCATTTTTGCGGGCAAGCAGCTCGAGGATGGTCGCACCCTGTCTGACTACAATATC 332170 Query 178104 CAAAAAGA 178111 || || || Sbjct 332171 CAGAAGGA 332178 >seq1 Length=3205512 Score = 154 bits (170), Expect = 4e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | ||||| || |||||||| |||||||| || || ||| Sbjct 2257691 CAGATTTTCGTAAAGACCTTGACAGGGAAGACGATCACTCTCGAGGTCGAGTCTTCGGAC 2257750 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||||||||| ||||| || ||||| ||||||||| Sbjct 2257751 ACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAGCAA 2257810 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| ||| | || ||||| | ||||| ||||||| ||| | Sbjct 2257811 CGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAACATT 2257870 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || ||||| |||| Sbjct 2257871 CAGAAAGAGTCTACTCTGCACCTTG 2257895 Score = 140 bits (154), Expect = 8e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| || || ||||| || ||| Sbjct 2257411 CAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCGGAC 2257470 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 2257471 ACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAG 2257530 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || |||||||| || ||||| | || ||| | ||||| || || Sbjct 2257531 CGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCTGATTACAATATC 2257590 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || ||||||| Sbjct 2257591 CAGAAGGAGTCTACCCTTCATCTTG 2257615 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || |||||||| || |||||||| | ||||| || || ||| Sbjct 2258204 CAGATCTTCGTCAAGACCCTCACAGGCAAGACGATCACGTTGGAGGTAGAGTCTTCGGAC 2258263 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| ||||| ||||| ||||| |||||||||||| Sbjct 2258264 ACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAGCAA 2258323 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || || | || || || | || ||| | ||||| ||| | Sbjct 2258324 CGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAACATT 2258383 Query 178104 CAAAAAGA 178111 || ||||| Sbjct 2258384 CAGAAAGA 2258391 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/110 (79%), Gaps = 3/110 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || ||||| || || ||||||||||| |||||||| Sbjct 647173 AAAATGC---AGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAG 647117 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||||||||| || |||||| ||||| |||||||| ||||| Sbjct 647116 TCTTCTGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGG 647067 >seq8 Length=1834011 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 ||||| || |||||||| || || || || |||||||| ||||||||||| || | || Sbjct 422714 ATCCCACCCGACCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGCACC 422655 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||||| |||||||||| || || || || ||||| Sbjct 422654 CTCAGCGATTATAACATCCAAAAAGAGTCTACCCTCCACCTTGT 422611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730984080716