Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20irregulare_20[genbank_20GCA_5F001458015.1_202015- 11-03] 14 sequences; 26,844,330 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 172 5e-38 seq1 134 1e-26 seq8 91.5 1e-13 >seq6 Length=2299419 Score = 172 bits (190), Expect = 5e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || |||||||| | || ||||||| ||| ||||||||| |||||||||||||| Sbjct 331711 GCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGGATGTTATAGTCGGA 331652 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| |||||||||||||| ||||| |||| |||||| ||||||| ||| Sbjct 331651 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGG 331592 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| | | ||| | || || | ||| | | ||||| ||||| | Sbjct 331591 AATGCCCTCCTTAT-CTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGA 331533 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | ||| ||||| || ||||| || ||||| |||||||| ||||| Sbjct 331532 CCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 331484 Score = 156 bits (172), Expect = 4e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 ||| ||| || || ||||||||||||||||||||| || |||||||| |||| |||| Sbjct 331409 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCTTCGA 331350 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 |||||||||| ||||| |||| |||||| ||||| | ||| | || |||||||||| || Sbjct 331349 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGG 331291 Query 41775 TTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 | || || | ||| | | ||||| ||||||||||| | ||| ||||| || Sbjct 331290 ATCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTT 331231 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| |||||| ||||| ||||||||| Sbjct 331230 CCAGTCAACGTCTTCACGAAGATCTGCATG 331201 Score = 141 bits (156), Expect = 9e-29 Identities = 162/214 (76%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| ||||| || || ||||||||| ||||||||||| || |||||||| |||| | Sbjct 331125 CACCGAGATGAAGAGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCT 331066 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| ||||| |||| ||||| ||||| | ||| | | ||||||||| Sbjct 331065 CGAGCTGCTTGCCCGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCC- 331007 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | | ||||| ||||||||||| | || ||||| Sbjct 331006 TGAATCTTCGCCTTGACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTC 330947 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864 || || || || ||||||||||| |||||||||| Sbjct 330946 TTCCCAGTGAGGGTCTTTACGAAGATCTGCATGT 330913 Score = 138 bits (152), Expect = 1e-27 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 ||||| || || ||||||||| || || ||||| || || ||||| | || ||||| Sbjct 331917 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 331858 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 |||||||||||||| || |||||||| ||||| | || | | |||||||||| ||| | Sbjct 331857 TGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC-TGAAT 331799 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 ||||| | ||| | | | ||||| |||||| ||||| | ||| ||||| || || Sbjct 331798 CTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCC 331739 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||||| ||||| ||||||||| Sbjct 331738 GGTCAGGGTCTTGACGAAGATCTGCATG 331711 Score = 129 bits (142), Expect = 5e-25 Identities = 158/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | || || |||||||||||||| || || ||||| || |||||||| | || | Sbjct 332198 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCCT 332139 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 ||||||||||||| || || || |||||||| ||||| | |||| | ||||||||| Sbjct 332138 CGAGCTGCTTGCCCGCAAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCC- 332080 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | || | | | ||||| ||||| ||||| | ||| || || Sbjct 332079 TGAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATTGTC 332020 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || ||||| || || |||||||| Sbjct 332019 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 331988 >seq1 Length=3205512 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | || || || || || ||||||||| ||||| |||||||| Sbjct 2258199 CCGCCGCGAAGACGGAGGACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2258140 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || |||||||||||||| || || || ||||||||||| |||| || Sbjct 2258139 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2258080 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| || | || |||| || | | |||||| |||||| || Sbjct 2258079 ATGCCCTCCTTATCC-TGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2258021 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| || || || || |||||||| Sbjct 2258020 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2257973 Score = 125 bits (138), Expect = 7e-24 Identities = 158/211 (75%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 ||||||| || |||||||| ||||||||||| || || || || ||||| |||| || | Sbjct 2258408 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2258349 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 |||||||| || || |||||||| || ||||||| || | || ||||||| | ||| Sbjct 2258348 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGT-CTTGA 2258290 Query 41775 TTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 | || | ||||| | | || | ||||| ||||| ||||||| ||| ||||| | Sbjct 2258289 ATCTTCGCCTTCACATTATCG--ATCGTGTCCGAAGACTCTACCTCCAACGTGATCGTCT 2258232 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || ||||| ||||| |||||||| Sbjct 2258231 TGCCTGTGAGGGTCTTGACGAAGATCTGCAT 2258201 Score = 122 bits (134), Expect = 8e-23 Identities = 157/213 (74%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 41653 CACCA-GATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 ||||| | ||||| || ||| ||||||||||| || |||||||| || ||| | || | Sbjct 2257898 CACCAAGGTGCAGAGTAGACTCTTTCTGAATGTTGTAATCGGAGAGAGTTCGCCCATCCT 2257839 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | | |||||| || ||||| |||| || || ||||| | |||| | ||||||||| Sbjct 2257838 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC- 2257780 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| | || || | ||| | | | |||||| ||||| ||||| | || ||||| Sbjct 2257779 TGAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTC 2257720 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||| ||||||||||||||||||||| Sbjct 2257719 TTCCCTGTCAAGGTCTTTACGAAAATCTGCATG 2257687 >seq8 Length=1834011 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||| || || |||||||| ||| | Sbjct 422593 CCACCGCGCAGACGAAGGACAAGGTGGAGGGTAGACTCTTTTTGGATGTTATAATCGCTG 422652 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||| |||| ||||||||||| ||||| || ||||||||||| ||||| Sbjct 422653 AGGGTGCGACCGTCTTCGAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGGTC 422705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303919096800