Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=1400765 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 145626 CCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAG 145685 |||||| |||| ||||| |||||||| || || || ||||| ||| || Sbjct 1003844 CCGCCT---GATCTTGAGCTTGGGAAAGTTTCGAGGTTCTCTAACAAGCTGCGTCTTAAG 1003788 Query 145686 GGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGG 145745 |||||| | ||| | | ||| ||||| || || |||| | ||||||| || ||| Sbjct 1003787 GGGCTCGATGTGATCGTTGTACACGTGGGCATCACCCATTTGGAGGATGAATTCGTGGGG 1003728 Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 |||| || |||| ||| || | ||||| || || |||| |||| ||| |||||||| Sbjct 1003727 CTCGCACCCTGTGATGTGTGCAATCATGTGCGTGAGGAGGGCGTAGGAGGCGATGTTGAA 1003668 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 ||| || || || || | ||| | || || ||||||| | ||||| Sbjct 1003667 GGGAACACCGAGGCCGACGTCGCATGAACGTTGGTACATCAGGCAG 1003622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076556593320