Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 217 2e-51 seq5 131 2e-25 >seq7 Length=1099351 Score = 217 bits (240), Expect = 2e-51 Identities = 301/414 (73%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG--GAGGTGCAGGTGGCCG 116837 || || ||||||||||| || || |||||||| || |||| |||||||| |||| Sbjct 134803 GATGGTATCGTCAACGAAAACCTCGTCGAGCGCTTT--TCAGCCGAGGTGCAATGTGCCG 134746 Query 116838 AGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATT 116897 |||| ||||||||| ||||| |||||| ||||||||| | ||||| |||| || | Sbjct 134745 AGGCCAAGTGCTTCTATGGCTTCCAGATCATGATGGAGAACATCCACTCTGAAACCTACT 134686 Query 116898 CGACCCTCATCGACACGTACGTGC-GCTCTTCGGAGGA-GAAGCTCCGTTTGTTGAACGC 116955 | | | |||||||| ||| | | | || | | | || | | | | ||| || Sbjct 134685 CCCTCTTGATCGACACCTACATCAAGGACCCCGCTCGCCGCACCTACCTCT-TCGAA-GC 134628 Query 116956 CATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGG 117015 ||| || || || || ||| || | |||||||| ||||| || || |||||| ||| Sbjct 134627 CATTGACACCATCCCCTGCATCCGCAAAAAGGCCGACTGGGCTCTTCGTTGGATCACCGA 134568 Query 117016 CAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTT 117075 | ||| || | || | |||||||||| | || || || |||||||||||| ||||||| Sbjct 134567 CGACGAGTCCACGTTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCTT 134508 Query 117076 TTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGAC 117135 || ||| || || |||| || ||||||||||| || || ||||||||||| || || Sbjct 134507 CTCTGGCTCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTCAC 134448 Query 117136 TTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 || |||||||||||||||| | ||||| ||||| || |||||||||||| Sbjct 134447 CTTTTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTG 134394 >seq5 Length=1214282 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || ||||||||| | || ||||| | Sbjct 997830 AACATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCT 997771 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| |||||| || || | ||||| ||||| ||||| | || Sbjct 997770 TCGGACACGATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGA 997712 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || ||||||| ||| ||||| ||||| || |||| |||||||| || || Sbjct 997711 CCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTTGCGGATTA 997652 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||| |||||| | || || || || ||| Sbjct 997651 CAACATCCAAAAGGAGTCGACCCTTCACCTCGTG 997618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218987472080