Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq1 114 1e-20 >seq5 Length=1214282 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| ||||| ||||||||||| | ||||| || || Sbjct 997618 CACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGACCGTCTTC 997677 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||||||||||||||| || ||||| || |||||||||||| Sbjct 997678 AAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTG 997737 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||||||| ||||||||| | ||| | || || Sbjct 997738 GATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTT 997797 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || |||||||||||| Sbjct 997798 ACCCGTGAGGGTCTTGACGAAAATCTGCATG 997828 >seq1 Length=1765974 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 118561 TGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCT 118620 |||| ||| || ||||| ||||||||||| || || || ||||||||||||||| Sbjct 1746407 TGTAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCT 1746466 Query 118621 GATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG 118680 |||| ||||| || ||||||||||| ||| ||| || || | |||| ||||| | Sbjct 1746467 GATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGG 1746526 Query 118681 TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || | || ||||| |||| ||| || ||||| |||||||| Sbjct 1746527 ATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || ||||| || || || ||||||||||||||||||| ||||| || ||||||||| Sbjct 1746701 TCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTCCTTG 1746760 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || ||| ||| || || | |||| ||||| | ||||||||||| || | Sbjct 1746761 TCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGTGATT 1746820 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| |||| ||| || ||||| |||||||| Sbjct 1746821 GTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 |||||||||||| || ||||| |||| || ||||| || || ||||| || |||||||| Sbjct 1745888 ATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGAGGGATACCCTCCTT 1745947 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 ||| ||| ||| || || | |||| ||||| | ||||||||| | || | Sbjct 1745948 GTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGATGACTCGACCTCAAGCGTAAT 1746007 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || || || || || |||||||| Sbjct 1746008 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 82.4 bits (90), Expect = 7e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 118561 TGTAATC-GCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGC 118619 ||||||| ||| || ||||| ||| |||||||| || || || |||| | |||||| Sbjct 1746133 TGTAATCTGCTAAT-GTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGT 1746191 Query 118620 TGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCC 118679 || || || || || |||||||||||| || || || || | || | ||||| Sbjct 1746192 TGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCT 1746251 Query 118680 GTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||| || | || | ||| ||||| |||| ||||| ||||| |||||||| Sbjct 1746252 GACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830225518836