Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq5 95.1 8e-15 >seq1 Length=1765974 Score = 100 bits (110), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 ||||||||| || | || |||| || | ||||||||| || || ||||| ||||||| Sbjct 1746407 TGTAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCT 1746466 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 | || || | | ||||||||| |||||| ||||| | | | |||| |||| Sbjct 1746467 GATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGG 1746526 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || | |||||| || ||||| || | ||| || |||||||||||||| Sbjct 1746527 ATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 ||||||||| || |||| | || || | ||||||||| || || || || ||||| | Sbjct 1745866 TGTAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTT 1745925 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 |||| || | | ||||||||| |||||| ||| | | | | |||| || | Sbjct 1745926 GGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAG 1745985 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || | ||| ||||| ||||||||||| || || || ||||||||||| Sbjct 1745986 ATGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 ||||||| | || ||| |||| || | ||||||||| || || ||||| ||||||| Sbjct 1746678 TGTAGTCTGCAAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCT 1746737 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 | || || | | ||||||||| |||||| ||| | | | | |||| |||| Sbjct 1746738 GATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGG 1746797 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || | |||||| || ||||| || | ||| || |||||||||||||| Sbjct 1746798 ATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 >seq5 Length=1214282 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || || || || |||||||| || | Sbjct 997601 CCACCACGCAGACGAAGCACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCA 997660 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||||||||| ||||| ||||| ||||||||||| || Sbjct 997661 AGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGG 997720 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | |||| || | || ||||| Sbjct 997721 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 997780 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || ||||| || || || || |||||||| Sbjct 997781 TCCAAGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 997827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071870064480