Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8 183 3e-41 seq7 154 1e-32 seq5 111 1e-19 seq1 82.4 7e-11 >seq8 Length=1060936 Score = 183 bits (202), Expect = 3e-41 Identities = 292/419 (70%), Gaps = 0/419 (0%) Strand=Plus/Minus Query 23312 GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATC 23371 ||||||||||| |||| || | ||| ||||| |||| || | || || ||| Sbjct 57794 GGACACATGAGTGTCCAGTCACCATCCTCTTCGACGCGCTTCATGAACAAGTCGGGAATC 57735 Query 23372 CATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA 23431 || || || ||||||| ||||| ||||| || || || |||||| ||||| ||| Sbjct 57734 CAAAGCGCATAGAACAAGTCGCGTGCGCGAACTTCTTCCTTGCCGTGATTCTTGCGCAAG 57675 Query 23432 TCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGT 23491 || | |||||| || ||||| |||||||| || ||||| || | ||| || || || || Sbjct 57674 TCGAGAAAGTCAAAGACGTCGGCATGCCAAGGTTCGAGATAGATGGCGAATGCACCGGGA 57615 Query 23492 CTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGC 23551 | ||| || || || |||||||| ||||| || || || ||| | | ||||| || Sbjct 57614 CGCTTGTTACCTCCTTGATCGACATAACGAGCTGTAGCGTCGTATGCGCGAAGCATGGGA 57555 Query 23552 ACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTG 23611 |||| |||||| || |||| ||| || | || ||||||| |||| |||| Sbjct 57554 ACGATACCGTTCGAGTAGCCGTTAGTGCCGGCAATGTAGGAGCCTTTTGAGCGAATGTTG 57495 Query 23612 TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTG 23671 || | ||||| ||| || || ||| ||| || || ||||| || || || || ||| Sbjct 57494 TGGATGTGGAGACCGATACCGCCGGCCGTCTTGGAGATCATAGCACACGTCTTGAGCGTG 57435 Query 23672 TCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 ||||||||||| ||||| ||| | | | ||||||| ||| ||||| || | ||| Sbjct 57434 TCGTAGATGCCTTCGATCGAGTCTTGCTGCATGGCGACCAGGAAGCACGACGAGAGTTG 57376 >seq7 Length=1099351 Score = 154 bits (170), Expect = 1e-32 Identities = 288/418 (69%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 57711 TCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAA-GTGAC 57769 || |||||||| || ||||| || | ||||| | |||||| || |||||| ||| | Sbjct 134806 TCTGATGGTATCGTCAACGAAAACCTCGTCGAGCGCTTTTCAGCCGAGGTGCAATGTGCC 134747 Query 57770 GGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTA 57829 | |||| | ||||| || || || || | || || ||| | || || |||| || Sbjct 134746 G-AGGCCAAGTGCTTCTATGGCTTCCAGATCATGATGGAGAACATCCACTCTGAAACCTA 134688 Query 57830 TTCGCTACTCATCGATACGTACGTGAAGGACAACGA-CGAGAAACGTAGACTGTTCAACG 57888 || || | ||||| || ||| | |||||| || || || || || ||| | | Sbjct 134687 CTCCCTCTTGATCGACACCTACATCAAGGACCCCGCTCGCCGCACCTAC-CTCTTCGAAG 134629 Query 57889 CGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAA 57948 | || || || || ||| ||| ||| ||||| || ||| | | ||||| | Sbjct 134628 CCATTGACACCATCCCCTGCATCCGCAAAAAGGCCGACTGGGCTCTTCGTTGGATCACCG 134569 Query 57949 GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCT 58008 || | | ||||||| |||||| | || || || || ||||||||||| || || |||| Sbjct 134568 ACGACGAGTCCACGTTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCT 134509 Query 58009 TTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGA 58068 | || ||| |||||| | || || ||| | ||||| || || || |||||||| || | Sbjct 134508 TCTCTGGCTCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTCA 134449 Query 58069 CGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 | ||| ||||||| | || || || ||||| |||||||| || || ||||| ||||| Sbjct 134448 CCTTTTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCT 134391 >seq5 Length=1214282 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| |||||||| ||||| || || || || || |||||| | || || || | Sbjct 997830 AACATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCT 997771 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || |||||||| || | || || ||| Sbjct 997770 TCGGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGAC 997711 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | |||||| | || | ||||| Sbjct 997710 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTTGCGGATTAC 997651 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| || ||||| ||||| || || ||| | ||| | || ||| Sbjct 997650 AACATCCAAAAGGAGTCGACCCTTCACCTCGTGCTTCGTCTGCGTGGTGGT 997600 >seq1 Length=1765974 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| ||||| || ||||| |||| || || | ||| Sbjct 1746855 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746796 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || ||| | ||||||||| || | || || || || Sbjct 1746795 GACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCTCCTGATCA 1746737 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||| || || || ||||| ||| | |||||| Sbjct 1746736 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGAC 1746700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766216121360