Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7 113 6e-20 >seq7 Length=1099351 Score = 113 bits (124), Expect = 6e-20 Identities = 154/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || ||| ||| ||||| ||||| | || | ||||||||||| ||||| Sbjct 134394 CAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGC 134453 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || |||||||| || ||||| || ||||| ||||| || ||||| ||||| Sbjct 134454 CCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAGAAG 134513 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT-GTCAT--GT 36334 || || || || || ||||| ||||| || | ||| || ||| | ||| ||| | || Sbjct 134514 ATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCA-AACGTGGACTCGTCGTCGGT 134572 Query 36335 -ATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 ||||| ||||||| |||||||| || Sbjct 134573 GATCCAACGAAGAGCCCAGTCGGCCTTTTT 134602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172528503720