Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7 131 2e-25 seq6 95.1 2e-14 >seq7 Length=1099351 Score = 131 bits (144), Expect = 2e-25 Identities = 276/411 (67%), Gaps = 3/411 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| ||||| ||||| | || || ||||||||||| ||||| Sbjct 134394 CAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGC 134453 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || |||||||| || ||||| || ||||| ||||| || ||||| |||||| Sbjct 134454 CCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAGAAG 134513 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || |||||||| |||| || | ||| || | ||| || ||| Sbjct 134514 ATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAACGTGGACTCGTCGTCGGTG 134573 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| ||||||| |||||||| || | || || || || || ||||| | Sbjct 134574 ATCCAACGAAGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGGCTTCG 134633 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| ||| | | || || | || || |||||||| || || || Sbjct 134634 AAGAGGTAGGTGCGGCGAGCGGGGTCCTTGATGTAGGTGTCGATCAAGAGGGAGTAGGTT 134693 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || || ||||| || || ||||| || || ||||| || | ||||||| | Sbjct 134694 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCACTTGGCCTCGGCACAT 134753 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 ||||| || | |||| || || | | ||||| || || || || ||| Sbjct 134754 TGCACCTCGGCTGAAAAGCGCTCGACGAGGTTTTCGTTGACGATACCATCA 134804 >seq6 Length=1191995 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 49934 GATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTAC 49993 ||||| ||||| | | | ||||| || |||||||| || || || || | || Sbjct 859625 GATGCTTCAAATGATCATAGATCAAGCAAGCGAAATCCGTATGTGTTCCTTCATCACGAC 859566 Query 49994 TAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 50053 | || ||||| |||||||| || | || ||||| ||||| ||||| || ||||| || | Sbjct 859565 TGATGAGTTCATTGGAAAAGGTCAAGCCCGGCATCAGGCCTCGCTTCTTTAGCCAGAAGA 859506 Query 50054 TGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTAC 50090 ||| || ||||| || ||||||||||| ||||| || Sbjct 859505 TGGCGGCGAATGAACCGGAAAAGAAGATACCTTCGAC 859469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268503714120