Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 >seq6 Length=1191995 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 || ||||| | ||| || ||||| || ||||| || || || ||||||| ||||| || Sbjct 859578 CCTTCATCACGACTGATGAGTTCATTGGAAAAGGTCAAGCCCGGCATCAGGCCTCGCTTC 859519 Query 13741 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800 |||| ||| || || || |||||||| ||||||||||| || || || || || || Sbjct 859518 TTTAGCCAGAAGATGGCGGCGAATGAACCGGAAAAGAAGATACCTTCGACACATGCGAAT 859459 Query 13801 GCTATTAGTCGTTCTCCAAACGATGC-TTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 ||||| || ||| || |||| || | || |||| | |||| ||||||||| Sbjct 859458 GCTATGAGCCGTGTTCGGAACG--GCAAGTCGGGTGTGATGT--ATTTCATAGCCCATTG 859403 Query 13860 AGAtttttttt 13870 || ||| |||| Sbjct 859402 AGCTTTCTTTT 859392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588602582120