Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7 127 3e-24 seq6 89.7 7e-13 >seq7 Length=1099351 Score = 127 bits (140), Expect = 3e-24 Identities = 253/370 (68%), Gaps = 5/370 (1%) Strand=Plus/Plus Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 ||||||||||| ||||| |||||||| || |||||||| || ||||| || || || ||| Sbjct 134436 TCGTTGGAAAAGGTGAGCCCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCA 134495 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226 || || ||||| |||||||| || || || || ||||| ||||| || | ||| || || Sbjct 134496 AAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCA-AA 134554 Query 42227 CCGGCACT-GTCAT--GT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 | | ||| ||| | || ||||| ||||||| |||||||| || | || || Sbjct 134555 CGTGGACTCGTCGTCGGTGATCCAACGAAGAGCCCAGTCGGCCTTTTTGCGGATGCAGGG 134614 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 || || || ||||| | ||||| ||| | | || || | || || || Sbjct 134615 GATGGTGTCAATGGCTTCGAAGAGGTAGGTGCGGCGAGCGGGGTCCTTGATGTAGGTGTC 134674 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 |||||| || || |||| || || ||||| || || ||||| || || ||||| Sbjct 134675 GATCAAGAGGGAGTAGGTTTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAA 134734 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCAC 42462 || ||||||||| | || || || | |||| || || | | |||||||| || Sbjct 134735 GCACTTGGCCTCGGCACATTGCACCTCGGCTGAAAAGCGCTCGACGAGGTTTTCGTTGAC 134794 Query 42463 TATTCCGTCA 42472 || || ||| Sbjct 134795 GATACCATCA 134804 >seq6 Length=1191995 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 ||||| | | | ||||| || |||||||| || || ||||| | ||| || | | Sbjct 859617 AAATGATCATAGATCAAGCAAGCGAAATCCGTATGTGTTCCTTCATCACGACTGATGAGT 859558 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 || |||||||| || | || ||||| ||||| ||||| || ||||| || || | || Sbjct 859557 TCATTGGAAAAGGTCAAGCCCGGCATCAGGCCTCGCTTCTTTAGCCAGAAGATGGCGGCG 859498 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTAC 42195 ||||| || ||||||||||| ||||| || Sbjct 859497 AATGAACCGGAAAAGAAGATACCTTCGAC 859469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138923155080