Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 172 8e-38 seq8 125 1e-23 seq3 86.0 9e-12 >seq7 Length=1099351 Score = 172 bits (190), Expect = 8e-38 Identities = 406/601 (68%), Gaps = 19/601 (3%) Strand=Plus/Minus Query 125163 TCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC 125220 || ||||| ||||||||||| || || || || || || || ||| || | || | Sbjct 134806 TCTGATGGTATCGTCAACGAAAACCTCGTCGAG-CGCTTTTCAGCCGAGGTG-CAATGTG 134749 Query 125221 CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGT 125280 | |||| |||||| || || ||||| |||||||| |||||| | ||||| |||| | Sbjct 134748 CCGAGGCCAAGTGCTTCTATGGCTTCCAGATCATGATGGAGAACATCCACTCTGAAACCT 134689 Query 125281 ACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAAC 125339 |||| |||| |||| ||||| || || || ||| | | |||| | Sbjct 134688 ACTCCCTCTTGATCGACACCTACATCAAGGACCCCGCTCGCCG-CACCTACCTCTTCGAA 134630 Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399 || || ||||| | || | || || |||||||| | |||| |||| |||||| Sbjct 134629 GCCATTGACACCATCCCCTGCATCCGCAAAAAGGCCGACTGGGCTCTTCGTTGGATCACC 134570 Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 |||||| |||| ||| ||||| | ||| | || || |||||||| |||||||||||| Sbjct 134569 GACGACGAGTCCACGTTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTC 134510 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 || || || ||||| ||||||| |||||||||||||| || ||||||||||| || Sbjct 134509 TTCTCTGGCTCCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTC 134450 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || |||||| | || || || ||||| || || ||| ||||||||| || Sbjct 134449 ACCTTTTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTC 134390 Query 125580 CTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATCAACAT 125638 || ||| | || ||||| || | | ||||| || || ||||| | | Sbjct 134389 CTCTTTACCCACCTCAAGCGTC----GTCCTCACCCCAGCATTGTCGAGAACATCATCGT 134334 Query 125639 TGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC-GGTCAGCA 125697 ||| ||||| | | | || || || || | ||||| | | || || | | Sbjct 134333 ------CGAGGCCGTCAAGCTCGAGCAGGAATTCTTGACCGAGGCTTTGCCTTGTAAAC- 134281 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 | |||||||||||| | | || |||||| | ||||| |||||||| || |||||||| | Sbjct 134280 TCATTGGCATGAACGGTGATCTCATGTGCCAATACATTGAGTTTGTAGCCGATCGTCTGC 134221 Query 125758 T 125758 | Sbjct 134220 T 134220 >seq8 Length=1060936 Score = 125 bits (138), Expect = 1e-23 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || || || || || || | ||| |||| | ||||||||||| || ||| Sbjct 57598 CAAGGAGGTAACAAGCGTCCCGGTGCATTCGCCATCTATCTCGAACCTTGGCATGCCGAC 57657 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||||||| |||| ||||||| || ||| ||||| | || || | ||| Sbjct 57658 GTCTTTGACTTTCTCGACTTGCGCAAGAATCACGGCAAGGAAGAAGTTCGCGCACGCGAC 57717 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| ||||| || ||| | || || |||||||||||||||||| | || | ||| || Sbjct 57718 TTGTTCTATGCGCTTTGGATTCCCGACTTGTTCATGAAGCGCGTCGAAGAGGATGGTGAC 57777 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGAT-TGCTGGGGCGAAGAGTT 97114 |||| || ||||| || | | || ||||| |||| ||| ||| ||| |||||| Sbjct 57778 TGGACACTCATGTGTCCTGCCGAGTGCCCCGGGTTGTCGGATGTGC-ACAGCGCAGAGTT 57836 Query 97115 TGA 97117 ||| Sbjct 57837 TGA 57839 >seq3 Length=1400765 Score = 86.0 bits (94), Expect = 9e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 || |||||||| ||||||||||| || ||||| ||| |||||| ||| || | |||| Sbjct 1003321 GAAGGCGATCTCGGGCCAGTGTATGGCTTCCAATGGCGGCACTTTGGCGCCGAATATGGC 1003380 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACAC 70182 |||||| || || |||| |||||||||||||| | || |||| || || ||| Sbjct 1003381 ACTTGCGAGGATGATTACACGGGCAAGGGTGTTGATCAACTTCA-ACAAGTCGTTCACAA 1003439 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC 70233 || || ||| || ||||| | || ||| | ||| || | ||||| || Sbjct 1003440 GATCCTGAACAACCCTACAGACCGAAGAATCATCATGAGCGCTTGGAACCC 1003490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058894313080