Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 111 4e-19 >seq1 Length=1765974 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| | || || | ||||||||| || || || || ||||| || || | ||| ||| Sbjct 1746680 TAGTCTGCAAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGA 1746739 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| || || || || |||||||||||||| || || || || | || ||| Sbjct 1746740 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGAT 1746799 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || || || ||||| ||||| | || || ||||| |||||||| Sbjct 1746800 GACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 107 bits (118), Expect = 4e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 104401 ACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 |||||| || || || || || ||||| || || | ||| ||||||||||| || || || Sbjct 1746426 ACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTC 1746485 Query 104461 TTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGT 104520 || |||||||||||||| ||||| || || | || ||| | || ||||| || || Sbjct 1746486 CTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGT 1746545 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| | || || ||||| |||||||| Sbjct 1746546 GATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| | ||||| | || || || || || || |||||||| || || | |||||| Sbjct 1745868 TAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGG 1745927 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || ||||| || || || || |||||||||||||| || || || || | || || Sbjct 1745928 TCTGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGAT 1745987 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || ||||| || ||||| ||||| || || || || || || || |||||||| Sbjct 1745988 GACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397913174364