Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 4e-13 >seq5 Length=1214282 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || ||||||||| ||||||||||| | ||| || || |||| || ||||| Sbjct 997625 TGAAGGGTCGACTCCTTTTGGATGTTGTAATCCG-CAAGGGTGCGACCGTCTTCAAGCTG 997683 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| || || | || |||||||| || || Sbjct 997684 CTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTT 997743 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || || || || | |||||| ||| | || ||||| ||||| Sbjct 997744 GGCCTTGACGTTGTCG--ATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCC 997801 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || ||||||||||| Sbjct 997802 GTGAGGGTCTTGACGAAAATCTGCAT 997827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251030578033