Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 >seq1 Length=1765974 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| ||||||| | | |||||||| ||||| ||||| || ||| Sbjct 1746430 TCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTCCTTG 1746489 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| |||||||| ||| | ||| ||||| | ||||| || | |||||| Sbjct 1746490 TCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGTGATT 1746549 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | ||| || |||||||||||||| Sbjct 1746550 GTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || ||| ||||||| | | |||||||| ||||| ||||| || ||| Sbjct 1746701 TCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTCCTTG 1746760 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| |||||||| ||| | ||| ||||| | ||||| || | |||||| Sbjct 1746761 TCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGTGATT 1746820 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | ||| || |||||||||||||| Sbjct 1746821 GTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || || ||||||| | | || || |||||||| ||||| || || Sbjct 1745888 ATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGAGGGATACCCTCCTT 1745947 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||||| ||| | ||| ||||||| ||||| |||| ||| || Sbjct 1745948 GTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGATGACTCGACCTCAAGCGTAAT 1746007 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || || || ||||||||||| Sbjct 1746008 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| ||||||| || | || || ||||| || ||||| || || Sbjct 1746155 ATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCTGGTGGGATACCCTCCTT 1746214 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| | | | ||||| | ||||| || | ||||| Sbjct 1746215 GTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCCAAAGTGAT 1746274 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | ||||| |||||||||||||| Sbjct 1746275 CGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291015079880