Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-29 seq4 84.2 3e-12 >seq6 Length=1191995 Score = 141 bits (156), Expect = 1e-29 Identities = 143/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| | || |||||||| || || |||||||| |||||||||||||| ||||||||||| Sbjct 233376 TCTTAGTGACAACATCCAGGGTATTACCAAGCCCGCTATCCGTCGTCTTGCTCGTCGTGG 233435 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | || || | | || || |||| ||||| ||| | |||||||| Sbjct 233436 TGGTGTCAAGCGTATTTCGGGTCTCATTTACGAGGAGACTCGTGGTGTCCTCAAGATCTT 233495 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| || || |||| ||| | | ||| || |||||||| || || |||||||| Sbjct 233496 CCTCGAGGGTGTCATCCGTGACTCGGTTACCTACACTGAGCACGCCAAGCGCAAGACTGT 233555 Query 16633 CACCTC 16638 ||| || Sbjct 233556 CACTTC 233561 >seq4 Length=1409158 Score = 84.2 bits (92), Expect = 3e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || || |||||||| ||||| |||||||| || ||||||||||| ||| Sbjct 143365 GACAACATCCAGGGTATTACCAAGCCCGCTATTCGTCGTCTCGCGCGTCGTGGTGGTGTC 143306 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGA 16545 |||||| | || || || |||| || Sbjct 143305 AAGCGTATTTCAGGCCTGATCTACGA 143280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075169827869