Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq7 125 9e-24 seq6 98.7 1e-15 >seq7 Length=1099351 Score = 125 bits (138), Expect = 9e-24 Identities = 278/412 (67%), Gaps = 5/412 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| ||||| ||||| | || || ||||||||||| ||||| Sbjct 134394 CAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGC 134453 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || |||||||| || ||||| || |||||||| || || ||||| |||||| Sbjct 134454 CCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAGAAG 134513 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-GTCAT--GT 33480 || || || || || ||||| ||||| || | ||| || ||| | || ||| | || Sbjct 134514 ATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCA-AACGTGGACTCGTCGTCGGT 134572 Query 33481 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||||| |||||||| || | || || || || || ||||| | Sbjct 134573 GATCCAACGAAGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGGCTTC 134632 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||||| ||| | | || || | || || |||||||| || || | Sbjct 134633 GAAGAGGTAGGTGCGGCGAGCGGGGTCCTTGATGTAGGTGTCGATCAAGAGGGAGTAGGT 134692 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| || || ||||| || || ||||| || || ||||| || | ||||||| | Sbjct 134693 TTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCACTTGGCCTCGGCACA 134752 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 || || || | |||| || || | | ||||| || || || || ||| Sbjct 134753 TTGCACCTCGGCTGAAAAGCGCTCGACGAGGTTTTCGTTGACGATACCATCA 134804 >seq6 Length=1191995 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 33278 GATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTAC 33337 ||||| ||||| | | | ||||| || |||||||| || || || || | || Sbjct 859625 GATGCTTCAAATGATCATAGATCAAGCAAGCGAAATCCGTATGTGTTCCTTCATCACGAC 859566 Query 33338 TAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 33397 | || ||||| |||||||| || | || ||||| ||||| ||||| || ||||| || | Sbjct 859565 TGATGAGTTCATTGGAAAAGGTCAAGCCCGGCATCAGGCCTCGCTTCTTTAGCCAGAAGA 859506 Query 33398 TGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTAC 33434 ||| |||||||| || ||||||||||| ||||| || Sbjct 859505 TGGCGGCGAATGAACCGGAAAAGAAGATACCTTCGAC 859469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946943034280