Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8 152 1e-31 >seq8 Length=1060936 Score = 152 bits (168), Expect = 1e-31 Identities = 253/363 (70%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||| || | || || ||||| || |||| ||||| || |||| |||||| | || ||| Sbjct 57403 ATGCAGCAAGACTCGATCGAAGGCATCTACGACACGCTCAAGACGTGTGCTATGATCTCC 57462 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 |||| || ||||| || ||| | |||||||| |||| || | | |||||| Sbjct 57463 AAGACGGCCGGCGGTATCGGTCTCCACATCCACAACATTCGCTCAAAAGGCTCCTACATT 57522 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 |||||| || |||||||| || | |||||||||||||| | | ||| ||| Sbjct 57523 GCCGGCACTAACGGCTACTCGAACGGTATCGTTCCCATGCTTCGCGCATACGACGCTACA 57582 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || | || ||||| || || || ||||| || || || || || |||||||| Sbjct 57583 GCTCGTTATGTCGATCAAGGAGGTAACAAGCGTCCCGGTGCATTCGCCATCTATCTCGAA 57642 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAAAAGAGGA 363920 ||| |||||||| | ||||| ||||| || | || || || ||| || || || || Sbjct 57643 CCTTGGCATGCCGACGTCTTTGACTTTCTCGACTTGCGCAAGAATCAC-GGCAAGGAAGA 57701 Query 363921 ATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT 363980 | | || ||||| || |||||||||| |||||| || | ||| || ||||||||||| Sbjct 57702 AGTTCGCGCACGCGACTTGTTCTATGCGCTTTGGATTCCCGACTTGTTCATGAAGCGCGT 57761 Query 363981 GGA 363983 || Sbjct 57762 CGA 57764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353048925806