Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=1765974 Score = 100 bits (110), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| || || | ||||| | ||||| |||||||| Sbjct 1746310 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACGATCACTTTGGAAGTCGAGTCGTCA 1746251 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || ||||| |||||| Sbjct 1746250 GACACGATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 1746191 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | || ||||||||||| || | ||||||| |||||| | | ||||||| Sbjct 1746190 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACATTAGCAGATTACA 1746133 Score = 100 bits (110), Expect = 2e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| |||| || ||||| || Sbjct 1746584 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746525 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| |||| | ||| ||||| || || || || ||||| || Sbjct 1746524 GACACGATCGACAACGTAAAGGCAAAGATTCAG-GACAAGGAGGGTATCCCTCCTGATCA 1746466 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || || | |||||| ||| ||| |||| Sbjct 1746465 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACGTTGGCCGACTACAG 1746406 Query 25178 TA 25179 || Sbjct 1746405 TA 1746404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| |||| || ||||| || Sbjct 1746855 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746796 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| |||| | ||| ||||| || || || || ||||| || Sbjct 1746795 GACACGATCGACAACGTGAAGGCAAAGATTCAG-GACAAGGAGGGTATCCCTCCTGATCA 1746737 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 ||||| | || ||||||||||| || | ||||| | ||| || Sbjct 1746736 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTAC 1746692 Score = 91.5 bits (100), Expect = 1e-13 Identities = 129/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || |||| || | || || ||||| ||| Sbjct 1746043 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTTGAGGTCGAGTCATCT 1745984 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| |||| | ||| ||||| || || || || || ||||| Sbjct 1745983 GACACGATCGACAACGTGAAGGCAAAGATTCAG-GACAAGGAGGGTATCCCTCCAGACCA 1745925 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||||| |||| ||||| ||||| || | || |||| || ||| | | ||| |||| Sbjct 1745924 ACAGCGCCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTCGCCGACTACA 1745866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327825720895