Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7 127 2e-24 >seq7 Length=1099351 Score = 127 bits (140), Expect = 2e-24 Identities = 280/417 (67%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||||||||| || || || | ||| ||| || || | Sbjct 134393 GCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAG 134452 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| || || |||||||| ||||| || || Sbjct 134453 CCCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAGAA 134512 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT--TACT- 93267 || || || ||||| ||||| || | | || |||||||| | ||| | | | Sbjct 134513 GATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAA---CGTGGACTCGTCGTC 134569 Query 93268 GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | ||||||| | |||||| ||||| ||||| || || || | || || || || Sbjct 134570 GGTGATCCAACGAAGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGGC 134629 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 | || ||||| || | | || ||||| || ||||| || || || || Sbjct 134630 TTCGAAGAGGTAGGTGCGGCGAGCGGGGTCCTTGATGTAGGTGTCGATCAAGAGGGAGTA 134689 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 ||||||| |||| |||||||| || ||||| || ||||| || | || || | Sbjct 134690 GGTTTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCACTTGGCCTCGGC 134749 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 ||||| || ||||| | ||| ||||| ||||| ||||| |||||||| || Sbjct 134750 ACATTGCACCTCGGCTGAAAAGCGCTCGACGAGGTTTTCGTTGACGATACCATCAGA 134806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860570294920