Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq5 93.3 4e-14 seq7 91.5 1e-13 >seq1 Length=1765974 Score = 100 bits (110), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || || ||| ||||| | ||||| || | | Sbjct 1746310 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACGATCACTTTGGAAGTCGAGTCGTCA 1746251 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || ||||||||||||||||| ||||| || ||| Sbjct 1746250 GACACGATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 1746191 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 || ||| | || ||||||||||| ||| | || ||| ||||| | | ||||||| Sbjct 1746190 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACATTAGCAGATTACA 1746133 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || |||| || || || || | || Sbjct 1746584 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746525 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||| ||||| |||||||||||||| || || ||||| Sbjct 1746524 GACACGATCGACAACGTAAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 1746465 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 || ||||| || ||||||||||| ||| | ||||| ||||| | |||| |||| Sbjct 1746464 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGCACGTTGGCCGACTACA 1746407 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || |||| || || || || | || Sbjct 1746855 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746796 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||| ||||| |||||||||||||| || || ||||| Sbjct 1746795 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 1746736 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 || ||||| || ||||||||||| ||| | || || Sbjct 1746735 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGA 1746701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || | || ||||| || || | | Sbjct 1746043 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTTGAGGTCGAGTCATCT 1745984 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||| ||||| |||||||||||||| || || || ||| Sbjct 1745983 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCAGACCAA 1745924 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 || || ||||| ||||| ||||| ||| | |||||| ||| || || |||| |||| Sbjct 1745923 CAGCGCCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTCGCCGACTACA 1745866 >seq5 Length=1214282 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || || || | || ||||| || |||| | || || || | Sbjct 997830 AACATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCT 997771 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| | |||| || || ||||||||||||||||| || || || Sbjct 997770 TCGGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGAC 997711 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | || || |||||| | | |||||| Sbjct 997710 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTTGCGGATTAC 997651 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| ||||| || || ||| Sbjct 997650 AACATCCAAAAGGAGTCGACC 997630 >seq7 Length=1099351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 117060 CGCATGATCGCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATA 117119 ||| |||| ||||| ||| ||||| ||||| ||||| || ||| |||||| |||| Sbjct 134545 CGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCTCCTTTGCTTCCATC 134486 Query 117120 TTTTTTATCAAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCG 117179 || | |||||| || || ||||| || || || ||| |||||| | || || Sbjct 134485 TTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTCACCTTTTCCAACGAGCTCATCTCC 134426 Query 117180 CGTGACGAAGGTTTACACACCGATTTTGCGTGC 117212 |||||||||||| | |||||||| ||||| ||| Sbjct 134425 CGTGACGAAGGTCTCCACACCGACTTTGCCTGC 134393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727831190645