Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13 118 2e-21 seq9 100 6e-16 seq7 91.5 3e-13 >seq13 Length=562416 Score = 118 bits (130), Expect = 2e-21 Identities = 203/292 (70%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 ||||| || |||||||||||||||| ||||| | || ||||| ||||| Sbjct 392297 GACTTTGTCAACAAGGAGCTCATTCTCTTCTCAATGGCCGACAACATTCGTTCGATTCCT 392356 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | |||||||||||||| ||||| ||| | ||||||| |||||||| Sbjct 392357 TCAGTTGCCGATGGCCTCAAGCCCGGTCAGCGCAAGGTGCTCTTTGGTTGCTTCAAGCGT 392416 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || || || | || || ||||| || || |||| || || || || | | | Sbjct 392417 AATCTCGTCAAGGAGATCAAGGTTCAGCAACTTGCTGGCTACGTCTCGGAGAAGACGGCT 392476 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTATGT 218756 ||||| |||||||| ||||| || || |||| || || | || ||| ||| ||| Sbjct 392477 TACCACCACGGTGAAGTCAGTCT-CACCATGGCCATCGTTGGTCTCGCTCAGAACTTTGT 392535 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||||||||||||| ||||||||| |||||| ||||| || ||| ||||| Sbjct 392536 AGGCAGTAACAACATCAACTTGCTGGACCCCAATGGTCAATTCGGTACTCGT 392587 >seq9 Length=939124 Score = 100 bits (110), Expect = 6e-16 Identities = 134/184 (73%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||| ||||| ||| | || ||||| || || |||| || |||| | |||||| || Sbjct 296218 TTGGTCCCAACGGTTCCGGCAAGTCGACTCTTGTCAAGCTCTTGACGGCCGAGACTGAGC 296159 Query 280237 CCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 ||| |||| || | | |||||||| |||||| || || | |||||| ||||||| Sbjct 296158 CCAACAAGGGTGGTGAGGTGTGGAAGCACCCCAACTTGGTTATTGGTTACGTTGCTCAGC 296099 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 ||||||||||||| ||||| | ||||| ||| |||||| | | ||||| | |||| Sbjct 296098 ACGCTTTCCACCATATCGACCAGCACCTCGACTCTACTCCTCTCGACTACATGCTCTGGC 296039 Query 280354 GCTA 280357 | || Sbjct 296038 GTTA 296035 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || || ||||||||||||||||||||||| || || |||| ||||| || | Sbjct 296699 GGCTCCCTTTCGGGTGGTTGGAAGATGAAGCTTGCTCTTGCTCGTGCCATCCTTTTCAAG 296640 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || || || | |||| || ||||| ||||||||| ||||| | |||||| | ||| Sbjct 296639 GCTGACATCTTGTTGCTCGACGAGCCCACCAACCACTTGGACGTCCTCAACGTCACTTGG 296580 Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 | | |||||| ||| || | |||| | ||| |||||||||| |||||||| Sbjct 296579 TTGATCGACTACCTCACCTCGCTCACTCAATG-CACATCCATCATTGTCTCGCACGACTC 296521 Query 279878 TGGCTTCCT 279886 | |||||| Sbjct 296520 CGACTTCCT 296512 >seq7 Length=1099351 Score = 91.5 bits (100), Expect = 3e-13 Identities = 269/411 (65%), Gaps = 8/411 (2%) Strand=Plus/Plus Query 251586 CAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCC 251645 || |||||| | ||||| ||||| |||||||| || | || | |||||| | ||| Sbjct 134150 CAAAGAGATCATTTCCATAAAGTCAAAGGGGTTGGTAGAGTTCCAGACCTTGGGGTTGCC 134209 Query 251646 AAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTT 251705 ||| || || | | || || || |||||||| | || || | ||| || ||| ||| Sbjct 134210 AAGGGCCACAAGCAGACGATCGGCTACAAACTCAATGTATTGGCACATGAGATCACCGTT 134269 Query 251706 CATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCG---TTGGCAAC 251762 ||||||||| | |||||| | ||||| | |||||||| ||| ||| || Sbjct 134270 CATGCCAATGAGTTTACAAGGCAAAGCCTCGGTCAAGAATTCCTGCTCGAGCTTG---AC 134326 Query 251763 TGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGCTTGTT-CTCCAGCTTTGAGT 251821 ||||| | | || || || ||| | | || | || || | | Sbjct 134327 GGCCTCGACGATGATGTTCTCGACAA-TGCTGGGGTGAGGACGACGCTTGAGGTGGGTAA 134385 Query 251822 ACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACA 251881 | ||||| | |||| | ||| ||||| ||||| || ||||| ||||||||| | Sbjct 134386 AGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAA 134445 Query 251882 GACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAG 251941 || || ||||| | |||||| ||| ||||||||||||| | |||||| |||| Sbjct 134446 AGGTGAGCCCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAG 134505 Query 251942 AGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAACG 251992 |||| | | |||||||| | | |||| |||||||| ||||||| Sbjct 134506 AGAAGAAGATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAACG 134556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836365417753