Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 185 2e-41 seq1 132 9e-26 seq9 125 1e-23 seq13 107 4e-18 >seq5 Length=1214282 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| ||||||||||| ||||| | Sbjct 997601 CCACCACGCAGACGAAGCACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCA 997660 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| |||||||| ||||| | || ||||| || || Sbjct 997661 AGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGG 997720 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| ||||||||| ||||| ||||| | || || || Sbjct 997721 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 997780 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 997781 TCCAAGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 997827 >seq1 Length=1765974 Score = 132 bits (146), Expect = 9e-26 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||| ||| || | ||||| || | |||||| || || || || || | |||||| Sbjct 1745868 TAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGG 1745927 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| |||||||||||||| ||| ||||| ||||| | | Sbjct 1745928 TCTGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGAT 1745987 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | || ||||| || || ||||||||||||||||| |||||||| Sbjct 1745988 GACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 129 bits (142), Expect = 1e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 ||||| | | ||| | |||||||| | |||||| ||||| || || | | |||||| Sbjct 1746135 TAATCTGCTAATGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTTGG 1746194 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || ||||| || || ||||||||||| ||||| ||||||||| || || ||||||| Sbjct 1746195 TCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTGAC 1746254 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| || || || || | ||| ||||| || |||||||| Sbjct 1746255 GACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| ||||| || ||||| | || || || || || || || ||| Sbjct 1746698 CCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTCC 1746757 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||||||||| ||| ||||| ||||| | ||| || || || | ||| Sbjct 1746758 TTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGTG 1746817 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || | |||||||| || |||||||| Sbjct 1746818 ATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || || || | |||||| ||||| || ||||| | || || || || || || || ||| Sbjct 1746427 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTCC 1746486 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||||||||| ||| ||||| ||||| | ||| || || || | ||| Sbjct 1746487 TTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGCGTG 1746546 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || | |||||||| || |||||||| Sbjct 1746547 ATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||| || || | || ||||| | |||||| ||||| || || || | || ||| Sbjct 1746950 TAGTCGGCAAGGGTACGACCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGGCGCTGCTGG 1747009 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || ||||| || ||||||||||| ||||| ||||||||| ||||| || || | Sbjct 1747010 TCAGGAGGAATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTATCGATCGTATCGGAA 1747069 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || || || | ||| ||||| || || |||||| Sbjct 1747070 GACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGG 1747105 >seq9 Length=939124 Score = 125 bits (138), Expect = 1e-23 Identities = 366/554 (66%), Gaps = 15/554 (3%) Strand=Plus/Plus Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 |||||| | |||||||| || ||||||||||| | | || || |||||| Sbjct 296512 AGGAAGTCGGAGTCGTGCGAGACAATGATGGATGTGCATTGAGTGAGCGAGGTGAGGTAG 296571 Query 225509 GTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGG 225568 ||| | ||| | |||||| |||||||| |||||| || || ||||| || | || | Sbjct 296572 TCGATCAACCAAGTGACGTTGAGGACGTCCAAGTGGTTGGTGGGCTCGTCGAGCAACAAG 296631 Query 225569 ATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGAC 225628 |||||||| | | |||||||| || | |||| |||||||| ||||| || || || Sbjct 296632 ATGTCAGCCTTGAAAAGGATGGCACGAGCAAGAGCAAGCTTCATCTTCCAACCACCCGAA 296691 Query 225629 AGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGG 225688 ||||||||||| || ||||| || | ||||||||| | | ||| || | Sbjct 296692 AGGGAGCCGATAGAGTGCTTTTGCTTGGCCTGGTCAAAGCCAACCGACTCGAGGGTAGAG 296751 Query 225689 ATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGG-ACGAGAGGTAATCATA 225747 | ||| |||||| | | || | || ||| | ||||| | || | | || Sbjct 296752 ACAATCTCCTCGGGGGTG--GCAA--GGAGACGCT--TGTCGGCAAGA-ACCCAGTCGAC 296804 Query 225748 TACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTG 225807 | || || || | | ||| ||||||||||||| | ||||| | || |||| | Sbjct 296805 AATGGAAATCTCGGCCTCGGACCCGTCAATGTCGTGCTGGACGTAGAAAGTGCGGACGAG 296864 Query 225808 AGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTT 225867 || |||||||| ||||| | |||||| || |||| || | ||||| ||| Sbjct 296865 CGACTTGTCGGGGAAACCCTCGACCTGGCCGTTGACAATGGCGTTCATGAGGGTCGACTT 296924 Query 225868 GCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGG--CGC 225925 ||| | ||||| | || ||| ||||| | | || ||||||| |||| || Sbjct 296925 GCCGGAACCGTTACGGCCACAGAGACCGTAGCGGTGACCACGCTTGAGACGGAGGGAAGC 296984 Query 225926 GTGGAGTTCAGGAGGATCTTGCCACCATAGG-CAAG--GGAGAACTCGCAATCGCACAGG 225982 ||| || || | ||||||| | || |||| |||| | | ||||| | |||| | Sbjct 296985 GTG--GTGGAGCAAGATCTTGGCTCCGTAGGCCAAGTTGAACGACTCGATGTTACACAAG 297042 Query 225983 TCCTCACCCTCCTC 225996 |||||||||||||| Sbjct 297043 TCCTCACCCTCCTC 297056 >seq13 Length=562416 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| || || || | |||||| || || || || | | ||||| || || ||| Sbjct 424272 AGGGTCCTGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 424213 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| ||||||||| ||||| ||||| | || || || Sbjct 424212 ATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 424153 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| |||||||| || ||||| ||| Sbjct 424152 TCCAAAGTGATGGTCTTACCCGTCAGG 424126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622019830760