Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 3e-15 seq1 89.7 4e-13 >seq5 Length=1214282 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| ||||||||||| | || ||| |||||||| || || || Sbjct 997631 GTCGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGACCGTCTTCAAGCTGCTTGCCG 997690 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| ||||| || || || ||||| ||||| || Sbjct 997691 GCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTG 997750 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || ||||| |||| ||| | || || || || || || Sbjct 997751 ACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTGAGGGTC 997810 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 997811 TTGACGAAAATCTGCATG 997828 >seq1 Length=1765974 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 |||||| |||||||| || || || || ||||||||||||| || || ||||| || Sbjct 1746692 GTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATA 1746751 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 || || ||||| ||||||| || | | || | ||||||| || ||||| || Sbjct 1746752 CCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGATGACTCGACCTCG 1746811 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || ||||| |||| ||| || ||||| |||||||| Sbjct 1746812 AGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 114205 TGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGT 114263 ||||||| ||| || || ||| |||||| || || || || || |||| | ||||||| Sbjct 1746133 TGTAATCTGCTAAT-GTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGT 1746191 Query 114264 TGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCG 114323 ||||| || || || || || ||||| ||||| || | | |||| ||||| Sbjct 1746192 TGGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCT 1746251 Query 114324 GTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || ||||| |||| || | ||| ||||| |||| ||||| ||||| |||||||| Sbjct 1746252 GACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Score = 82.4 bits (90), Expect = 6e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 |||| ||| || || ||| || || || || || || || ||||||||||||| | Sbjct 1746407 TGTAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCT 1746466 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 | || ||||| || || || ||||| ||||||| |||| | || | ||||||| Sbjct 1746467 GATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGG 1746526 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || | || | || ||||| |||| ||| || ||||| |||||||| Sbjct 1746527 ATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134231027196