Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7 232 1e-55 seq8 145 1e-29 >seq7 Length=1099351 Score = 232 bits (256), Expect = 1e-55 Identities = 419/599 (70%), Gaps = 19/599 (3%) Strand=Plus/Minus Query 42510 TGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTG 42569 |||||||| ||||||||||| || |||||| | |||||||| ||| || || Sbjct 134737 TGCTTCTATGGCTTCCAGATCATGATGGAGAACATCCACTCTGAAACCTACTCCCTCTTG 134678 Query 42570 CTCAACACGTACATCCTGGATCCCG-TCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 || |||| |||||| ||| |||| ||| || | | || ||| | ||||| || || Sbjct 134677 ATCGACACCTACATCAAGGACCCCGCTCGC-CGCACCTACCTCTTCGAAGCCATTGACAC 134619 Query 42629 GATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCC-CGACG 42687 || ||||||||| || ||||| |||||||| || |||||| | | | ||| Sbjct 134618 CATCCCCTGCATCCGCAAAAAGGCCGACTGGGCTCTTCGTTGGATC-ACCGACGACGAGT 134560 Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747 | ||||| | |||| | ||| | || ||| ||||||||||||||||||||||||| ||| Sbjct 134559 CCACGTTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCT 134500 Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGA 42807 |||| || |||||||||||||||||| || | | |||||||| |||||||| || | Sbjct 134499 CCTTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTCACCTTTTCCA 134440 Query 42808 ACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGA 42867 |||| |||||| | | ||||| || || || | |||||||||||||||| ||| | Sbjct 134439 ACGAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCC---TCTTTA 134383 Query 42868 GCCACCTCAGGCACAAGCCCTCGAAGGAGC-GGGTCCGGGCCATCATCACGGAGGCCGTG 42926 |||||||| || | |||| ||| ||| | ||||||| |||||||| Sbjct 134382 CCCACCTCAAGC-GTCGTCCTCACCCCAGCATTGTCGAGAACATCATCGTCGAGGCCGTC 134324 Query 42927 GAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCA 42985 || ||||| |||| ||| | || || | || || ||| || | ||||||||| Sbjct 134323 AAGCTCGAGCAGGAATTCTTGACCGAGGCTTTG-CCTTGTAAACTCATTGGCATGAACGG 134265 Query 42986 CGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTC 43044 || ||||||||| | ||||| ||| || ||||| | ||| | |||| | ||| Sbjct 134264 TGATCTCATGTGCCAATACATTGAGTTTGTAGCCGATCGTCTGCTTGTGGCCCTTGG--- 134208 Query 43045 TCAGCCGC---CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTG 43100 || || | ||| ||| | | |||||| ||||||||||| | ||||| ||| Sbjct 134207 -CAACCCCAAGGTCTGGAACTCTACCAACCCCTTTGACTTTATGGAAATGATCTCTTTG 134150 >seq8 Length=1060936 Score = 145 bits (160), Expect = 1e-29 Identities = 622/987 (63%), Gaps = 67/987 (7%) Strand=Plus/Minus Query 244474 CATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 ||||||| | || ||||| ||||| | |||| |||| ||| | ||| ||| ||||||| Sbjct 58313 CATGAAGGCATCTGCCAGACCCTGAATACCGAGACCGACGGGACGGTGACGCATGTTGGA 58254 Query 244534 GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGT 244593 | || || || |||||||| ||||| ||||||| |||||||| | |||| ||| Sbjct 58253 GTTGCGAGCCTCTGGAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAAGTTGAAGGT 58194 Query 244594 GATCATGCGGACGACGTCGGCCAGC--AGCTGAAAGTCGTACTCGTAGGGATCCTCGGCG 244651 || | ||| || | || |||| | | | ||||| | | ||||| Sbjct 58193 GACC-----GACTTGGTAACCGAGTGAAGCTTC---TTGAAGTCGTATGTCTTGTCGGCC 58142 Query 244652 ATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCC 244711 ||| ||| | || || | || | | || |||||||||||||| || || Sbjct 58141 ATGTTGA------CGAATGCGGGCAAAGCAAGGGAAGCGAGGTTGCAGACGGCGACTTCA 58088 Query 244712 TCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGG 244771 || | || |||| || ||||||||||||||||| ||||||||||||| || Sbjct 58087 TCTGGAGCGGAATACTCGATGATCTCGGTGCAGAGGTTGGATGACTTGATGGTGCCGAGA 58028 Query 244772 TGCTGGTGATTGGACTTGGC-----------------------------------GTTGC 244796 | || || || |||||||| |||| Sbjct 58027 TTCTTCTGGTTCGACTTGGCTGGCCGTCAGCTTTTCCTCGCTCAAGAAACTCACAGTTGG 57968 Query 244797 AGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGT 244856 || |||||||| || | ||| || || || ||||| ||| || |||| | | Sbjct 57967 CAGCATCCTTGTAAAGGAGGAAAGGACCACCCGTCTCAGTCTGAGCCTCGAGAATAGCAT 57908 Query 244857 TCCAGAGGTCCCTAGCCTTGACCGT---CCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGG 244913 ||| || | |||||||| || | ||| |||| ||| ||| || | Sbjct 57907 ACCAAAGCTTTTGAGCCTTGATAGTTTTCTTGC---CCTTCATCTCATTCTCATACTTGA 57851 Query 244914 TGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGC 244973 |||| || || ||||| | || || || | ||||||||| || || | Sbjct 57850 TGTAAAGCTTGTCAAACTCTGCGCTGTGCACATCCGACAACCCGGGGCACTCGGCAGGAC 57791 Query 244974 ACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGA 245033 ||||||| |||| || || | || | ||| | || |||||| | |||||| ||||| | Sbjct 57790 ACATGAGTGTCCAGTCACCATCCTCTTCGACGCGCTTCATGAACAAGTCGGGAATCCAAA 57731 Query 245034 GGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCC 245092 | || | ||| | ||| | | | || ||| ||| ||| ||||| | || || Sbjct 57730 GCGCATAGAACAAGTCGCGTGCGCGAACTTCTTCCTTGCC-GTGATTCTTGCGCAAGTCG 57672 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152 | |||||||||||||||| | ||||| || || | |||| |||| || ||||| ||| Sbjct 57671 AGAAAGTCAAAGACGTCGGCATGCCAAGGTTCGAGATAGATGGCGAATGCACCGGGACGC 57612 Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGG 245208 ||||| ||||| || || | | | ||||| |||| | | ||| || | || Sbjct 57611 TTGTTACCTCCTTGATCGA----CATAACGAGCTGTAGCGTCGTATGCGCGAAGCATGGG 57556 Query 245209 CACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTT 245268 || || ||||| |||| |||||| ||||| ||||||| ||| || | | ||| Sbjct 57555 AACGATACCGTTCGAGTAGCCGTTAGTGCCGGCAATGTAGGAGCCTTTTGAGCGAATGTT 57496 Query 245269 GCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGT 245328 | |||| | || | |||||||| ||||||||| | || || |||||| || Sbjct 57495 GTGGATGTGGAGACCGATACCGCCGGCCGTCTTGGAGATCATAGCACACGTCTTGAGCGT 57436 Query 245329 GTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG 245388 ||| ||||| || || ||| || |||| || ||| ||||| || || || || Sbjct 57435 GTCGTAGATGCCTTCGATCGAGTCTTGCTGCATGGCGACCAGGAAGCACGACGAGAGTTG 57376 Query 245389 GGGCTTGGGGCTGCACGAGTTGAACAG 245415 ||| | ||| ||| | |||||| || Sbjct 57375 GGGGTGAGGGGTGCCTGCGTTGAAGAG 57349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338810460080