Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq8 143 3e-29 seq7 120 4e-22 seq6 87.8 2e-12 >seq8 Length=1060936 Score = 143 bits (158), Expect = 3e-29 Identities = 407/620 (66%), Gaps = 9/620 (1%) Strand=Plus/Minus Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649 |||||||||||||| | | | || |||||||| || || | || ||||||||| | | Sbjct 57965 GCATCCTTGTAAAGGAGGAAAGGACCACCCGTCTCAGTCTGAGCCTCGAGAATAGCATAC 57906 Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708 || | | | | | || | | ||| ||| | | ||| | ||| ||||| |||| Sbjct 57905 CAAAGCTTTTGAGCCTTG-ATAGTTTTCTTGCCCTTCATCTCATTCTCATACTTGATGTA 57847 Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768 || ||||||||| | | | || || | ||| || || | || || | Sbjct 57846 AAGCTTGTCAAACTCTGCGCTGTGCACATCCGACAACCCGGGGCACTCGGCAGGACACAT 57787 Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828 ||| | ||| | |||| |||| || || ||||||||||| | ||| || ||||| || || Sbjct 57786 GAGTGTCCAGTCACCATCCTCTTCGACGCGCTTCATGAACAAGTCGGGAATCCAAAGCGC 57727 Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888 |||| | || || |||| ||||||| | || ||||| ||||| || | ||| Sbjct 57726 ATAGAACAAGTCGCGTGCGCGAACTTCTTCCTTGCCGTGATTCTTGCGCAAGTCGAGAAA 57667 Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 114945 ||| | || || || ||||| ||||| || || | |||| || || ||| Sbjct 57666 GTCAAAGACGTCGGCATGCCAAGGTTCGAGATAGATGGCGAATGCACCGGGACGCTTGTT 57607 Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005 ||| | || | ||||| | ||||| || | || |||||||||| |||| |||||| Sbjct 57606 ACCTCCTTGATCGACATAACGAGCTGTAGCGTCGTATGCGCGAAGCATGGGAACGATACC 57547 Query 115006 ATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCATGGATG 115063 | || | ||| || || || || || ||| || || | | | | |||||| Sbjct 57546 GTTCGAGTAGCCGTTAGTGCCGGCAATGTAGGAGCCT--TTTGAGCGAATGTTGTGGATG 57489 Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123 || | ||| ||||| || ||| ||| ||||| || ||| | |||| || ||||| Sbjct 57488 TGGAGACCGATACCGCCGGCCGTCTTGGAGATCATAGCACACGTCTTGAGCGTGTCGTAG 57429 Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183 || || ||||||||||| || | |||| |||||||| ||| | ||| || Sbjct 57428 ATGCCTTCGATCGAGTCTTGCTGCATGGCGACCAGGAAGCACGACGAGAGTTGGGGGTGA 57369 Query 115184 GGTGTACCAGCGTTGAAGAG 115203 || || || ||||||||||| Sbjct 57368 GGGGTGCCTGCGTTGAAGAG 57349 >seq7 Length=1099351 Score = 120 bits (132), Expect = 4e-22 Identities = 177/247 (72%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||||||||| ||||||||||||||||| || || || ||| || || Sbjct 134396 GGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGCCC 134455 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||| | |||||| || | | ||| || || ||||||||||| Sbjct 134456 GGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAGAAGAT 134515 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG--CGCGAC-TTTGTG-T 126221 ||||| || || || |||| || ||||| ||||| | | | || | | ||| | Sbjct 134516 GCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAACGTGGACTCGTCGTCGGTGAT 134575 Query 126222 CAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTT 126281 | ||| | | ||||| | |||||||| ||| || |||| ||| | || |||| Sbjct 134576 CCAACGA----AGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGGCTT 134631 Query 126282 CAAAGAG 126288 | ||||| Sbjct 134632 CGAAGAG 134638 >seq6 Length=1191995 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || || ||||| |||||||||||| || ||| || || ||||| || || |||||| Sbjct 859578 CCTTCATCACGACTGATGAGTTCATTGGAAAAGGTCAAGCCCGGCATCAGGCCTCGCTTC 859519 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || || |||||||| || |||||||| || || ||||| ||||| Sbjct 859518 TTTAGCCAGAAGATGGCGGCGAATGAACCGGAAAAGAAGATACCTTCGACACATGCGAAT 859459 Query 126185 GCAAAGAGACG 126195 || | ||| || Sbjct 859458 GCTATGAGCCG 859448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353353591640