Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 >seq5 Length=1214282 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 997636 CTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAA 997695 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 997696 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGT 997754 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | |||||||| || ||||| || ||||| | Sbjct 997755 TGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTGAGGGTCTTGA 997814 Query 42196 CAAAGATTTGCATTTT 42211 | || || ||||| || Sbjct 997815 CGAAAATCTGCATGTT 997830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212575924720