Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 102 8e-17 seq5 89.7 5e-13 seq1 86.0 6e-12 >seq7 Length=1099351 Score = 102 bits (112), Expect = 8e-17 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CC 52385 || ||| | ||||||||||| | ||||| | |||||| | |||| || || Sbjct 134614 CCCTGCATCCGCAAAAAGGCCGACTGGGCTCTTCGTTGGATC---ACCGACGACGAGTCC 134558 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 ||| | ||||||||| || | || || ||| ||||||||| | || || || ||| | Sbjct 134557 ACGTTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCTCC 134498 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 ||||| ||||||| | | || | | || | |||||||| || || || |||| Sbjct 134497 TTTGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTCACCTTTTCCAAC 134438 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 ||| | || || || |||||||| || ||||| |||||||| |||||| Sbjct 134437 GAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTC 134390 >seq5 Length=1214282 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | || | | | ||||||||||| |||||||| || | | Sbjct 997601 CCACCACGCAGACGAAGCACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATC-CGC 997659 Query 138448 ATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || |||| ||| || || || || |||| |||| |||||||| ||||| |||| Sbjct 997660 A-AGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAG 997718 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | ||||| || ||||| ||| || || | | || | ||||| | ||||| | Sbjct 997719 GGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGA 997778 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || ||||| || || || || || |||||||||||| Sbjct 997779 CCTCCAAGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 997828 >seq1 Length=1765974 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 138437 TGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTT 138496 |||||||| | |||||| |||||||| || || || | | |||| || ||||||| Sbjct 1745866 TGTAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTT 1745925 Query 138497 GGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTC 138554 |||| ||||| ||||| || ||||| ||| | |||| || | ||| || | ||||| Sbjct 1745926 GGTCTGGAGGGATACCCTCCTTGTC-CTGAATCTTTGCCTTCACGTTG-TCGATCGTGTC 1745983 Query 138555 GGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| ||||| | ||| | || || || || || || || || || |||||||| Sbjct 1745984 AGATGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || ||||| || || |||| | |||| | |||||||||||| || || ||||| || ||| Sbjct 1746156 TCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTTGGTCTGGTGGGATACCCTCCTTG 1746215 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || || | | || | ||||| | |||||| || || | || | | Sbjct 1746216 TCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCCAAAGTGATC 1746275 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||||| ||||| ||||| |||||||| Sbjct 1746276 GTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262195291760