Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq1 104 2e-17 >seq5 Length=1214282 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | || ||||| ||||| || |||||||| Sbjct 997598 GCACCACCACGCAGACGAAGCACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCC 997657 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | |||||| || || ||||| || || ||| |||| | |||||||| || ||| Sbjct 997658 GCAAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGA 997717 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || || ||||||||||| ||| || ||||| |||| |||| ||||||| | ||| Sbjct 997718 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAAGACTC 997776 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| || | ||| | || || || || || || || || |||||||||||| Sbjct 997777 GACCTCCAAGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAAATCTGCATG 997828 >seq1 Length=1765974 Score = 104 bits (114), Expect = 2e-17 Identities = 135/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 126933 TATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCT 126992 || |||| ||| ||| ||||||| || || ||||| || || || |||| | |||| Sbjct 1746404 TACTGTAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCT 1746463 Query 126993 GCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC--TTGAGTTGTTCGACGGT 127050 ||||||| ||||| || |||||||||||| ||| | | ||| || |||| |||| || Sbjct 1746464 GCTGATCAGGAGGGATACCCTCCTTGTCC-TGAATCTTTGCCTTTACGTTG-TCGATCGT 1746521 Query 127051 GTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 127110 ||| | |||||| |||| || | || ||||| |||| ||| || ||||| ||||| Sbjct 1746522 GTCGGATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTG 1746581 Query 127111 CAT 127113 ||| Sbjct 1746582 CAT 1746584 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 126936 TGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCT 126995 ||||||| | | |||||| ||| || ||||| || || || ||||||| ||||| | Sbjct 1746133 TGTAATCTGCTAATGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTT 1746192 Query 126996 GATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCC 127054 | || || || || ||||||||||| ||| || ||||| |||| || | ||||| Sbjct 1746193 GGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG-TCAATCGTGTCT 1746251 Query 127055 GTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||||||| | || | ||| ||||| |||| ||||| ||||| |||||||| Sbjct 1746252 GACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Score = 89.7 bits (98), Expect = 5e-13 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | ||||||||||| ||||| || ||||||||| Sbjct 1746701 TCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCCTCCTTG 1746760 Query 127019 TCCGTGATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 ||| ||| | | || ||| | |||| |||| ||||| | |||||| |||| || | Sbjct 1746761 TCC-TGAATCTTTGCCTTCACGTTG-TCGATCGTGTCGGATGACTCGACCTCGAGCGTGA 1746818 Query 127077 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| ||| || ||||| |||||||| Sbjct 1746819 TTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500603855920