Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq8 152 6e-32 seq7 129 7e-25 >seq8 Length=1060936 Score = 152 bits (168), Expect = 6e-32 Identities = 413/626 (66%), Gaps = 21/626 (3%) Strand=Plus/Minus Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 ||||||||||| || | | || |||||||| || || | || ||||||||| | | Sbjct 57965 GCATCCTTGTAAAGGAGGAAAGGACCACCCGTCTCAGTCTGAGCCTCGAGAATAGCATAC 57906 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | | | | || | | ||| ||| | | ||| | ||| ||||| |||| Sbjct 57905 CAAAGCTTTTGAGCCTTG-ATAGTTTTCTTGCCCTTCATCTCATTCTCATACTTGATGTA 57847 Query 116670 GAGGGCCTCAAACTCTTCACC---CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACA 116726 || ||||||||| | | |||| || || | ||| || || | ||||| Sbjct 57846 AAGCTTGTCAAACTCTGCGCTGTGCACATCC---GACAACCCGGGGCACTCGGCAGGACA 57790 Query 116727 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 | ||| | ||| | |||| |||| || || ||||||||||| | ||| || ||||| || Sbjct 57789 CATGAGTGTCCAGTCACCATCCTCTTCGACGCGCTTCATGAACAAGTCGGGAATCCAAAG 57730 Query 116787 CGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 ||| |||| | || || |||| ||||||| | || ||||| ||||| || | Sbjct 57729 CGCATAGAACAAGTCGCGTGCGCGAACTTCTTCCTTGCCGTGATTCTTGCGCAAGTCGAG 57670 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG 116906 |||||| | || || || ||||| ||||| || || | |||| || || | |||| Sbjct 57669 AAAGTCAAAGACGTCGGCATGCCAAGGTTCGAGATAGATGGCGAATGCACC---GGGACG 57613 Query 116907 ------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAAT 116960 ||| | || | ||||| | || || |||| || |||||||||| |||| Sbjct 57612 CTTGTTACCTCCTTGATCGACATAACGAGCTGTAGCGTCGTATGCGCGAAGCATGGGAAC 57553 Query 116961 GATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCG 117018 |||||| | || | ||| || || || || || ||| || || | | | | | Sbjct 57552 GATACCGTTCGAGTAGCCGTTAGTGCCGGCAATGTAGGAGCCT--TTTGAGCGAATGTTG 57495 Query 117019 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTG 117078 |||||||| | ||| ||||| || ||| ||| ||||| || ||| | |||| || Sbjct 57494 TGGATGTGGAGACCGATACCGCCGGCCGTCTTGGAGATCATAGCACACGTCTTGAGCGTG 57435 Query 117079 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGT 117138 ||||||| || ||||||||||| || | |||| |||||||| ||| | ||| Sbjct 57434 TCGTAGATGCCTTCGATCGAGTCTTGCTGCATGGCGACCAGGAAGCACGACGAGAGTTGG 57375 Query 117139 GGCCTTGGTGTACCAGCGTTGAAGAG 117164 || || || || ||||||||||| Sbjct 57374 GGGTGAGGGGTGCCTGCGTTGAAGAG 57349 >seq7 Length=1099351 Score = 129 bits (142), Expect = 7e-25 Identities = 179/249 (72%), Gaps = 14/249 (6%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||||||||| ||||||||||||||||| || || || ||| || || Sbjct 134397 GCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGCCCG 134456 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || | | ||| ||||||||||||||||| Sbjct 134457 GGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAGAAGATG 134516 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGT----- 127692 ||||| || || || |||| || ||||||||||| | ||||| | || Sbjct 134517 CCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAACG---TGGACTCGTCGTCGGTG 134573 Query 127693 ATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| ||| | | ||||| | |||||||| ||| || |||| ||| | || || Sbjct 134574 ATCCAACGA----AGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGGC 134629 Query 127753 TTCAAAGAG 127761 ||| ||||| Sbjct 134630 TTCGAAGAG 134638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506946928280