Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 seq1 109 1e-18 seq13 86.0 1e-11 >seq5 Length=1214282 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || |||||||||||||||| |||||| || || | || | || ||| Sbjct 997616 AGCACGAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGACCGTCT 997675 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||||||||||||||| ||| || || || || Sbjct 997676 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCT 997735 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || ||||| ||||| ||| Sbjct 997736 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTC 997795 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || ||||| || Sbjct 997796 TTACCCGTGAGGGTCTTGACGAAAATCTG 997824 >seq1 Length=1765974 Score = 109 bits (120), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 199447 GACGT--TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGA 199504 ||||| ||||||| ||||| || | || || || |||||||| ||||| ||||||||| Sbjct 1746400 GACGTACTGTAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGA 1746459 Query 199505 CGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACG 199564 |||||||| || ||| || || || |||||||||||| ||| ||| |||| Sbjct 1746460 CGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATC 1746519 Query 199565 GTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATT 199624 ||||| | || || || || | |||||| ||||| || || | ||| || ||||| || Sbjct 1746520 GTGTCGGATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATC 1746579 Query 199625 TG 199626 || Sbjct 1746580 TG 1746581 Score = 109 bits (120), Expect = 1e-18 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||||||| || | || | || ||||| |||||||| ||||| |||||||||||||||| Sbjct 1746678 TGTAGTCTGCAAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCT 1746737 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 | || ||| || || || |||||||||||| ||||||| |||| ||||| | Sbjct 1746738 GATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGG 1746797 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | |||||| ||||| || || | ||| || ||||| || || Sbjct 1746798 ATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTG 1746852 Score = 95.1 bits (104), Expect = 3e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||||||| || | ||| | ||||| || |||||||| || || ||||| || ||||| | Sbjct 1745866 TGTAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTT 1745925 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| ||| || || || |||||||||||| ||||||| |||| ||||| | Sbjct 1745926 GGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAG 1745985 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | ||| || ||||| || ||||| || || || || || || Sbjct 1745986 ATGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 1746040 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 |||| || || || || | |||||||| |||||||| ||||| ||||| | |||||| | Sbjct 1746133 TGTAATCTGCTAATGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTT 1746192 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| || || || || || || ||||| ||| ||| || | ||||||| Sbjct 1746193 GGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTG 1746252 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || ||||| ||||||||||| || || | ||||| ||||| || || Sbjct 1746253 ACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTG 1746307 >seq13 Length=562416 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||||||| || | ||||| || || || |||||||| || || ||||| | |||||| | Sbjct 424283 TGTAGTCCGCAAGGGTCCTGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGTT 424224 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 | || ||| ||| || || || |||||||| ||| ||| |||| ||||| | Sbjct 424223 GATCAGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCG 424164 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAG 199608 | || || ||||| ||||| ||||||||||| || Sbjct 424163 AAGACTCGACCTCCAAAGTGATGGTCTTACCCGTCAG 424127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921101537211