Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 seq1 109 6e-19 >seq5 Length=1214282 Score = 118 bits (130), Expect = 1e-21 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || | || ||||| |||| || ||||||||||||||||| Sbjct 997636 CTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGACCGTCTTCAAGCTGCTTGCCGGCGAA 997695 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||||| ||| Sbjct 997696 GATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGT 997754 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || |||| |||||||| || ||||| || || || | Sbjct 997755 TGTCGATCGTGTCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTGAGGGTCTTGA 997814 Query 46581 CAAAGATTTGCATTTTG 46597 | || || ||||| ||| Sbjct 997815 CGAAAATCTGCATGTTG 997831 >seq1 Length=1765974 Score = 109 bits (120), Expect = 6e-19 Identities = 133/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 |||| || | || ||||| | || ||||||||||||||||| || ||||| ||||| | Sbjct 1746133 TGTAATCTGCTAATGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTT 1746192 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||| | || | | ||||||||| |||||| ||||| ||| | | | |||||| Sbjct 1746193 GGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCT 1746251 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||| ||||| || ||||| |||| ||||| |||||||| ||||| Sbjct 1746252 GACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Score = 100 bits (110), Expect = 3e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 46413 TATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCT 46472 || ||||||||| | ||||| |||| ||||||||||||||||| || || | |||| Sbjct 1746404 TACTGTAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCT 1746463 Query 46473 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTG 46531 |||| || | || | | |||||||||| ||||| ||| | ||| | | | |||| Sbjct 1746464 GCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTTA-CGTTGTCGATCGTG 1746522 Query 46532 TCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGC 46591 ||| || || || || | |||||| || ||||| |||| || || |||||||| ||| Sbjct 1746523 TCGGATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGC 1746582 Query 46592 AT 46593 || Sbjct 1746583 AT 1746584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 129/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||||| ||||| || | || |||||||||||||| || || || | |||||| | Sbjct 1745866 TGTAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTT 1745925 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||| | || | | |||||||||| ||||| ||| | ||| | | | |||||| Sbjct 1745926 GGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCA-CGTTGTCGATCGTGTCA 1745984 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || | ||| ||||| ||||| || || || || || ||||| ||||| Sbjct 1745985 GATGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 46413 TATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCT 46472 || ||||||| | || || || |||| || |||||||||||||| || || | |||| Sbjct 1746675 TACTGTAGTCTGCAAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCT 1746734 Query 46473 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTG 46531 |||| || | || | | |||||||||| ||||| ||| | ||| | | | |||| Sbjct 1746735 GCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCA-CGTTGTCGATCGTG 1746793 Query 46532 TCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGC 46591 ||| || || || || | |||||| || ||||| |||| || || |||||||| ||| Sbjct 1746794 TCGGATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGC 1746853 Query 46592 AT 46593 || Sbjct 1746854 AT 1746855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238166839160