Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 194 2e-44 seq5 131 2e-25 seq1 82.4 8e-11 >seq7 Length=1099351 Score = 194 bits (214), Expect = 2e-44 Identities = 294/413 (71%), Gaps = 4/413 (1%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| || | || ||||| | ||| ||||| |||||| || || | Sbjct 134393 GCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAG 134452 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| || || || |||||||| || |||| || || ||| || ||||| Sbjct 134453 CCCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAGAA 134512 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||||||||| || ||||| | |||||||||| | ||||||| || | | || Sbjct 134513 GATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAACGTGGACTCGTCGTCGGT 134572 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 |||||| || || ||||| |||||||||| || ||| || || || || ||||| || Sbjct 134573 GATCCAACGAAGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGGC-TT 134631 Query 133134 CAACAAACGGAGTTTC-TCTTCCGAGGAAC-GCACGTAGGTGTCGATGAGGGTCGAATAC 133191 | | | | | || | | | || || | | |||||||||||| | | || || Sbjct 134632 CGA-AGAGGTAGGTGCGGCGAGCGGGGTCCTTGATGTAGGTGTCGATCAAGAGGGAGTAG 134690 Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251 |||| ||||| | ||||||||| ||| || ||||| || |||||| |||||| | Sbjct 134691 GTTTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCACTTGGCCTCGGCA 134750 Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304 ||||| || | || |||||||| || |||||||||||||| || || Sbjct 134751 CATTGCACCTCGGCTGAAAAGCGCTCGACGAGGTTTTCGTTGACGATACCATC 134803 >seq5 Length=1214282 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || ||||||||| | || |||||| | Sbjct 997830 AACATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCT 997771 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | |||| | || | || |||| ||||| ||||| || || | || Sbjct 997770 TCGGACACGATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGA 997712 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| ||||| | ||| ||||| ||||| || |||| |||||||| || || Sbjct 997711 CCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTTGCGGATTA 997652 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| |||| || || | ||||| ||| || | || || Sbjct 997651 CAACATCCAAAAGGAGTCGACCCTTCACCTCGTGCTTCGTCTGCGTGGTGG 997601 >seq1 Length=1765974 Score = 82.4 bits (90), Expect = 8e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||| || | || |||||| | | Sbjct 1746043 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTTGAGGTCGAGTCATCT 1745984 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||| || | ||||| ||||| || || | ||||| Sbjct 1745983 GACACGATCGACAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCAGACCA 1745925 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||||| || || | || ||||| ||||| || || | || || ||| |||||||| Sbjct 1745924 ACAGCGCCTTATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTCGCCGACTACA 1745866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172593678720