Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5 244 1e-59 seq13 212 8e-50 >seq5 Length=1214282 Score = 244 bits (270), Expect = 1e-59 Identities = 714/1103 (65%), Gaps = 50/1103 (5%) Strand=Plus/Minus Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 || ||||| | |||||| ||| |||| || || || ||||| | || || | ||| Sbjct 637095 GGAGTCATGACACCACCAGCAGTCTCGATACCGAGGGAAAGAGGGGAGACATCGAGGAGG 637036 Query 6983 AACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 | || ||| || | ||| ||||| || | || || || || || | || Sbjct 637035 AGCAAGTCCTGGGTGGCCTCGGAGGTATCACCGGTAAGAATTGCAGCCTGAACGGCGGCA 636976 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACC-GTTAAAATA 7101 ||||| ||||| ||||| |||||||| || | | || | || || | || || Sbjct 636975 CCGTAGGCGACGGCCTCGTCGGGGTTGATGGACCTGTTGGGCTCACGGCCAGAGAACATG 636916 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 || || | | | ||| || || ||||| || || || |||||||| | ||||| || Sbjct 636915 -TCGGAGACGAGCTTTTGGATCTTAGGGATACGAGTGGAACCACCGACGAGGACGATCTC 636857 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 || || || || || |||||||| ||||| || || || ||||| || ||||| Sbjct 636856 GTTAACGTTTGACTTGTCGATCTTGGAGTCGCGGAGGACCTTCTCGACGGGCTCCATGGT 636797 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 |||||| | |||| || || ||||| ||||| |||||||| ||||| || ||||| Sbjct 636796 GCCACGGAAGAGGTCCTGGCAAAGCTCCTCGAAACGAGCACGGGTGATGGAGGTGTAGAA 636737 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 || | |||||| | | || || || || || | || || || | ||| || | || Sbjct 636736 GTCGATACCGTCGAAGAGGGAGTCGATCTCGATAGAGGTCTGGGCAGCCGACGAGAGAGT 636677 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || |||||||| || || || | ||||||||||||||| | ||| || || || Sbjct 636676 GCGCTTGGCACGCTCACAGGCGGTACGCAGACGACGAAGGGCACGAGCGTTGCCAGAGAT 636617 Query 7402 ATCT-------------------------------------TTCTTATGTTTACGTTTAA 7424 ||| ||||| | || || || | Sbjct 636616 GTCTATTGTTAGCGAGGTTCTCATTCAAAGGAAACTCACCCTTCTTGTTCTTGCGCTTGA 636557 Query 7425 ACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484 |||| | ||||| | ||| | || || || |||||||||||||| || | Sbjct 636556 ACTCCTGGACAAAGTGGTTGACGAGACGGTTGTCAAAGTCCTCACCACCCAAGTGAGTGT 636497 Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544 | || || || || ||||| || |||||||| | || ||| | | | || ||||| | Sbjct 636496 CACCAGCAGTGGCCTTGACCTCGAAGATACCGTCCTCGATGGTAAGGAGGGAGACATCGA 636437 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGA 7604 | || ||||| |||| |||||| ||||| |||||| | || | || ||||| |||| Sbjct 636436 ATGTTCCACCTCCCAAGTCAAAGATGAGGACGTTCTTCTCACCCTCAGACTTCTTGTCGA 636377 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCA 7663 ||||||| || || || || || || || || || || ||||||| |||| | || || Sbjct 636376 GACCGTAAGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGAAGGACA-TCGAGACCC 636318 Query 7664 GCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACC 7723 | || | || || || || || || || || || |||||||||||||| ||||| Sbjct 636317 GAGATGAGACCGGCGTCCTTGGTGGCCTGACGCTGAGAGTCGTTAAAGTAGGCGGGGACG 636258 Query 7724 GTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTG 7783 || || || || | | ||| | |||||| || | || || | || ||||| ||| Sbjct 636257 GTGACAACGGCCTTGGCGACGGTTCCACCGAGGTAGGCCTCGGCAGTCTCCTTCATCTTG 636198 Query 7784 GTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCA 7843 |||||||| || || ||||| |||| | || ||| ||||| || Sbjct 636197 ACGAGAACCATGGAAGAGATCTCCTCAGGAGTGAAGGTCTTCTCCTCACCACGGTGCTCG 636138 Query 7844 ACTTCAATCATGGGTTTATCCGCAGCACC---GGGGATAACCTTATACGACCAATCTTTC 7900 || | ||| | || || || |||| | || |||||| | | ||| | ||| Sbjct 636137 ACCTGAATGACAGGCTT----GC--CACCCTTGTCGAGAACCTTGAAAGGCCAGTGCTTC 636084 Query 7901 ATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAA 7960 || ||| || |||| || | |||||| | ||||| | |||||| || || ||| Sbjct 636083 ATGTCGGACTGCACCTCGGCATCGGCAAACTTGCGGCCGATCAAACGCTTGGCGTCGAAA 636024 Query 7961 ACTGTGTTTTTGGGGTTCATGGC 7983 || ||||| | |||||||||||| Sbjct 636023 ACGGTGTTGTAGGGGTTCATGGC 636001 Score = 105 bits (116), Expect = 8e-18 Identities = 115/152 (76%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || || || ||||| ||| | | | || || |||||||| Sbjct 635935 TGGTTCTTGGCGGCATCTCCAATGAGACGCTCAGAGTCGT---TGAATGCAACGTACGAA 635879 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 ||||| || || || || |||||||| || || ||||| ||||||||||||||||| ||| Sbjct 635878 GGGGTAGTGCGGTTACCCTGGTCGTTTGCGATGATTTCAACGCGGTCGTTTTGCCAAACG 635819 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAAT 8139 |||| || || || || || || |||||||| Sbjct 635818 GCGACACAGGAGTAGGTCGTGCCCAAATCAAT 635787 >seq13 Length=562416 Score = 212 bits (234), Expect = 8e-50 Identities = 383/560 (68%), Gaps = 0/560 (0%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 || || ||||| |||||||||||| | |||| || || |||| | | | |||||| Sbjct 111835 TCTTCGAAACGAGCACGGGTAATGTTGGCGGAGAAGTCGACACCGTTGAAGAGCGAATCG 111776 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | ||| || || | ||| || | || ||||| || |||||||| |||| Sbjct 111775 ACCTCGACGGTGGTCTGGGTGACCGAGGAGAGGGTACGCTTGGCACGCTCACAAGCCGAC 111716 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 | | |||||||| ||||| |||| |||| || || ||| | || || | ||| Sbjct 111715 CTCAGGCGACGAAGCGCACGGGGGTCGTCGGAGATGTCAAGCTTGTTCTTGCGCTGGAAC 111656 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | |||||| |||||| | ||||| || |||||||||||||| || || Sbjct 111655 TCGGCCTTGAAGTGCTCAAGGAGGGTGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCA 111596 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || || || || ||||| |||||| ||| || ||| | | ||| |||||||| Sbjct 111595 CCGGCCGTGGCCTTGACGGCAAAGACACCACCAGTGATGGAAAGGAGCGAGACATCAAAT 111536 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGA 7606 || ||||| || || || || ||||| |||||| | || || | | || | || ||| Sbjct 111535 GTTCCACCTCCGAGATCGAAGATGAGAACGTTCTTCTCCTCCTTGGTCTTTTGGTCAAGA 111476 Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA 7666 ||||| || ||||| || || ||||| || || || ||||| ||| || ||||||||| Sbjct 111475 CCGTAGGCAATAGCGGCAGCGGTTGGCTCGTTGATGATACGGAGAACGTCGAGGCCAGCA 111416 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || | | || || || || || | || || || ||||| |||||||| ||||| || Sbjct 111415 ATGGCACCGGCGTCCTTGGTAGCAAGACGCTGAGAGTCGTTGAAGTAGGCAGGGACGGTG 111356 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTA 7786 || || || | | |||| |||| || || | | || | || || ||||| ||||| Sbjct 111355 ACAACGGCCTTCTTGACAGTCTTGCCAAGCTTGGCCTCGGAGACGTCCTTCATCTTGGTC 111296 Query 7787 AGAACCATCGATGAAATCTC 7806 | ||||| | || ||||| Sbjct 111295 AAGACCATGGCGGAGATCTC 111276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132538007720