Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7 122 1e-22 seq1 102 1e-16 seq8 93.3 5e-14 seq13 91.5 2e-13 seq6 89.7 6e-13 >seq7 Length=1099351 Score = 122 bits (134), Expect = 1e-22 Identities = 124/159 (78%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 ||||| ||||| || | || ||||| || ||||| |||||||||||||| ||||| Sbjct 134554 TTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCTCCTT- 134496 Query 102234 TGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 ||| | || | |||||||||||||| || |||||||| || ||| ||| |||||||| Sbjct 134495 TGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTCACCTTTTCCAACGA 134436 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||| |||||||| || |||||| || ||||| Sbjct 134435 GCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGC 134397 >seq1 Length=1765974 Score = 102 bits (112), Expect = 1e-16 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 16044 GCACTGCG-TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT 16102 |||||||| |||||| || | ||||| | ||| || |||||||||||| ||||| || Sbjct 1313237 GCACTGCGCTTGCTT-CCGATTGCATCGAGCTCGTCGATGAAGACGATGGATGGTGCCTT 1313179 Query 16103 TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTC 16162 | |||||| || ||||||| || || || ||||||||||| ||||| ||||||||||| Sbjct 1313178 CTTGCGAGCTGCTGCAAAGAGTTCGCGGACGCGCTTGGCGCCTACACCGACAAACATCTC 1313119 >seq8 Length=1060936 Score = 93.3 bits (102), Expect = 5e-14 Identities = 308/477 (65%), Gaps = 13/477 (3%) Strand=Plus/Plus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 ||||||||||| || || || |||||| | || || ||||| | || | || Sbjct 57349 CTCTTCAACGCAGGCACCCCTCACCCCCAACTCTCGTCGTGCTTCCTGGTCGCCATGCAG 57408 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 | || || ||| | ||||| |||| ||| |||| ||||| ||||| ||| | Sbjct 57409 CAAGACTCGATCGAAGGCATCTACGACACGCTCAAGACGTGTGCTATGATCTCCAAGACG 57468 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAG 111903 || || |||||||| | |||||||| | | || | ||| ||| | ||| | Sbjct 57469 GCCGGCGGTATCGGTCTCCACATCCACAACAT--TCGCTCAAAAGGCTCCTACATTGCCG 57526 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 | || || || | || | ||||| |||| |||||||||| || |||| ||||| | Sbjct 57527 GCACTAACGGCTACTCGAACGGTATCGTTCCCATGCTTCGCGCATACGACGCTACAGCTC 57586 Query 111964 GCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGC 112017 | ||||| | |||| || ||||| | || | |||| ||||||| || | Sbjct 57587 GTTATGTCGATCAAGGAGGTAACAAGCGTCCC---GGTGCATTCGCCATCTATCTCGAAC 57643 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | ||||| || || || | || || || || ||||| || || || | || || | Sbjct 57644 CTTGGCATGCCGACGTCTTTGACTTTCTCGACTTGCGCAAGAATCACGGCAAGGAAGAAG 57703 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 || ||||| | |||| || || |||||||| || | ||||||||| | || | Sbjct 57704 TTCGCGCACGCGACTTGTTCTATGCGCTTTGGATTCCCGACTTGTTCATGAAGCGCGTCG 57763 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG 112194 | ||| ||| | ||| | ||| | ||||| | | || ||||| | || |||| Sbjct 57764 AAGAGGATGGTGACTGGACACTCATGTGTCCTGCCGAGTGCCCCGGGTTGTCGGATG 57820 >seq13 Length=562416 Score = 91.5 bits (100), Expect = 2e-13 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 176911 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAAC 176970 ||| ||||||||||||||||| || ||||| |||||||| || || || ||||||| || Sbjct 391603 CTTTCCACGAAGAGGGAAGACGCCATAGTGGTCGCGACCGACGACGGAAAGACCCGAGAC 391544 Query 176971 CGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGC 177020 || || | ||| || ||||| || ||||||| ||||| || || |||| Sbjct 391543 TGCCAGAGCTTTGGCGGAATCTCCTTCTGTCAAAATGAGGGTGCA-TTGC 391495 >seq6 Length=1191995 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 || ||| | ||||| || ||||| || ||||||||||| || ||||| ||| ||| || Sbjct 859448 CGGCTCATAGCATTCGCATGTGTCGAAGGTATCTTCTTTTCCGGTTCATTCGCCGCCATC 859507 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | ||||| ||||||||||| || ||||| || | ||| ||||| || || ||| | Sbjct 859508 TTCTGGCTAAAGAAGCGAGGCCTGATGCCGGGCTTGACCTTTTCCAATGAACTCATCAGT 859567 Query 102303 CGTGACGAGGGA 102314 ||||| || ||| Sbjct 859568 CGTGATGAAGGA 859579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742143943760