Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq8 114 2e-20 seq7 109 6e-19 >seq4 Length=1409158 Score = 127 bits (140), Expect = 2e-24 Identities = 314/468 (67%), Gaps = 19/468 (4%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | ||||||||||||||| || || | | ||| || |||| ||| | ||| Sbjct 957942 AATGTGACGATCGAAACGACCAGGACGCATCAATGCAGGGTCGAGAACGTCGGGTCTGTT 957883 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTGT---CGAAACCGTCCATTTCTGTGAG 11612 ||| | |||| || || | | ||| ||| ||||||||||||| || ||| Sbjct 957882 GGTACCTGCAAGCACAACGACGTG---CTCTTTGGTGCCGAAACCGTCCATCTCGACGAG 957826 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC-----TGCCGAA 11667 |||||||||| |||| || ||||| ||||| | | || || |||| | Sbjct 957825 CAGCTGGTTGAGCGTCGACTCGCGCTCGTCGTTACCGCCGAATCCTCCGCCCTTGCC--A 957768 Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 || |||| |||| ||||||||||| |||| || | ||| ||||| || | | | Sbjct 957767 CGAGTCTTGCCGATGGCGTCAATCTCGTCGACAAAGATGATGCACGGGGCGT-GCTTCTT 957709 Query 11728 GCCTGTT--CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGA 11785 | | ||| |||| || || || || ||| | || ||||| |||||||| ||||| | Sbjct 957708 GGC-GTTGGCGAAGAGGTCGCGAACGCGCGAAGGACCGACACCGACGAACATTTCAACAA 957650 Query 11786 AGTTTGCGGCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCG 11844 | | | |||| || || | ||| || || | || |||||||| ||||| || Sbjct 957649 ACTCGGAACCAGAG-ACAGATAGGAATGGGACCTGAGCTTCACCAGCTGTGGCTTTGGCA 957591 Query 11845 AGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCA 11904 ||||| || ||||| ||||| |||| ||| | || | ||||||||| || ||||||||| Sbjct 957590 AGGAGGGTTTTACCGGTACCGGGTGGACCCGAAAGGATGGCGCCACGAGGAATCTTGGCA 957531 Query 11905 CCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 || | ||| |||||| ||||||||| | |||| |||| Sbjct 957530 CCGAGTTTTTCGTACTTGGCAGGCTCCTTGAGGAACTTGACAAACTCC 957483 >seq8 Length=1060936 Score = 114 bits (126), Expect = 2e-20 Identities = 682/1093 (62%), Gaps = 56/1093 (5%) Strand=Plus/Minus Query 109975 TACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTC 110034 |||| ||||| ||| |||| |||||| || ||||| || || |||||||| || ||| Sbjct 58432 TACGCACCCTCCCTCTCTGCCATCTCGGACGAGGCCTCGAGCGCGGCATGATAGATCGTC 58373 Query 110035 TCAAAAATATGAGCATTCATGAGGCGAGACT-CTTCACAGTCGAAGGGAAGACCACAAAG 110093 || | || || || || | || || | || | || |||||| || | | | Sbjct 58372 TCTGAGATCTGGGCGTTGA-GAAGCTTGGCTTCGGGACTGTCGAAAGGCATCCGAAGTGC 58314 Query 110094 AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA 110153 || || |||| || |||||||||| ||||||||| | ||| || || |||||| || Sbjct 58313 CATGAAGGCATCTGCCAGACCCTGAATACCGAGACCGACGGGACGGTGACGCATGTTGGA 58254 Query 110154 GCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213 | ||||| | |||||||| ||||| |||||||||| || | || || Sbjct 58253 GTTGCGAGCCTCTGGAACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAAGTTGAAGGT 58194 Query 110214 CACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCT-CCTTATTGA 110272 || | ||| || | || || || | | | ||| | || || ||| || | |||| Sbjct 58193 GACCGACTTGGTAACCGAGTGAAGCTTCTTGAAGTCGTATGTCTT-GTCGGCCATGTTGA 58135 Query 110273 CATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGT 110332 | || ||| | ||||| || || || ||||| || | || ||| ||| | Sbjct 58134 CGAATGCGGGCAAAGCAAGGGAAGCGAGGTTGCAGACGGCGACTTCATCTGGAGCGGAAT 58075 Query 110333 ATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCG 110392 | || | || || || || | |||||| ||| ||| || | |||||||| |||| Sbjct 58074 ACTCGATGATCTCGGTGCAGAGGTTGGATGACTTGATGGTGCCGAGATTCTTCTGGTTCG 58015 Query 110393 ATTTGG-----------------------------------AGTTGCATGCATCCTTATA 110417 | |||| ||||| |||||||| || Sbjct 58014 ACTTGGCTGGCCGTCAGCTTTTCCTCGCTCAAGAAACTCACAGTTGGCAGCATCCTTGTA 57955 Query 110418 GAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGC 110477 || | | | || ||| || || ||||| | || |||||| || | ||| | | Sbjct 57954 AAGGAGGAAAGGACCACCCGTCTCAGTCTGAGCCTCGAGAATAGCATACCAAAGCTTTTG 57895 Query 110478 GGCGGGGACAGTTGCGTTAGCGAGACCTTCCTC-----CTCGTACTTGGTGTACAAGTCC 110532 || || |||| || | ||||| || ||| |||||| |||| | | Sbjct 57894 AGCCTTGATAGTTTTCTT-----GCCCTTCATCTCATTCTCATACTTGATGTAAAGCTTG 57840 Query 110533 TCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC-CTTGTCGGGACAGAAGAGGGA 110591 ||||| || | || |||||| || | |||| || || | | ||||| | ||| | Sbjct 57839 TCAAACTCTGCGCTGTGCACATCCGACA-ACCCGGGGCACTCGGCAGGACACATGAGTGT 57781 Query 110592 CCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAA 110651 ||| | ||| |||| || || | ||||||||||| ||| |||||||| | ||| |||| Sbjct 57780 CCAGTCACCATCCTCTTCGACGCGCTTCATGAACAAGTCGGGAATCCAAAGCGCATAGAA 57721 Query 110652 AAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCAT 110711 | ||| || ||| | ||||| | || || || ||| | || | |||||| | Sbjct 57720 CAAGTCGCGTGCGCGAACTTCTTCCTTGCCGTGATTCTTGCGCAAGTCGAGAAAGTCAAA 57661 Query 110712 GATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGC 110768 || || | ||||| ||||||||||||| |||| | || ||| ||| | Sbjct 57660 GACGTCGGCATGCCAAGGTTCGAGATAGATGGCGAATGCACCGGGACGCTTGTTACCTCC 57601 Query 110769 CTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGA 110828 || | ||||| || ||||| || | | | | | ||||| |||| || || | || Sbjct 57600 TTGATCGACATAACGAGCTGTAGCGTCGTATGCGCGAAGCATGGGAACGATACCGTTCGA 57541 Query 110829 TTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACC 110888 | || || || || ||| ||| || | ||||||| |||||| || | ||| Sbjct 57540 GTAGCCGTTAGTGCCGGCAATGTAGGAGCCTTTTGAGCGAATGTTGTGGATGTGGAGACC 57481 Query 110889 AATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAATACCAT 110947 ||||| || ||| ||| || |||||| ||| |||| || | || || || | Sbjct 57480 GATACCGCCGGCCGTCTTGGAGATCATAGCACACGTCT-TGAGCGTGTCGTAGATGCCTT 57422 Query 110948 CAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTC 111007 | ||||| ||| || |||| | || ||||| || || | || || |||| || | Sbjct 57421 CGATCGAGTCTTGCTGCATGGCGACCAGGAAGCACGACGAGAGTTGGGGGTGAGGGGTGC 57362 Query 111008 CCGCATTGAAGAG 111020 | || |||||||| Sbjct 57361 CTGCGTTGAAGAG 57349 >seq7 Length=1099351 Score = 109 bits (120), Expect = 6e-19 Identities = 328/498 (66%), Gaps = 29/498 (6%) Strand=Plus/Plus Query 119253 GAGATGTTTTCCATAAAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTTGACCAA 119310 ||||| |||||||||||||||| || || | |||||||||| |||| ||||| |||| Sbjct 134154 GAGATCATTTCCATAAAGTCAAAGGGGTTGGTAGAGTTCCAGACCTTGG-GGTTG-CCAA 134211 Query 119311 CTTGTTTCAGAAGACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCA 119370 || |||||||||| ||| |||| || |||| | |||| || |||| Sbjct 134212 GGGCCACAAGCAGACGATCGGCTACAAACTCAATGTATTGGCACATGAGATCACCGTTCA 134271 Query 119371 TACCTATGAGATTACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTT 119430 | || ||||| ||||| || | ||| ||| | ||| | || ||||| || || || | Sbjct 134272 TGCCAATGAGTTTACAAGGCAAAGCCTCGGTCAAGAATTCCTGCTCGAGCTTGACGGCCT 134331 Query 119431 CTTTCACGATGGAGTGAATAGTTTCTGTCGATGGTTTGTTT-------CTCAAGAGTT-- 119481 | |||||| || | || | | ||| | | | | | ||| | Sbjct 134332 CG---ACGATGATGT------TCTC-GACAATGCTGGGGTGAGGACGACGCTTGAGGTGG 134381 Query 119482 -TAAACAACTCTACGGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTA 119540 |||| | |||||| || || || ||||| || || ||||||||||| || Sbjct 134382 GTAAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTG 134441 Query 119541 CTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTT 119600 ||| || || |||||||| || | ||||| ||||| ||||||| | ||| Sbjct 134442 GAAAAGGTGAGCCCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAG 134501 Query 119601 CCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGA 119660 ||||| |||||||||||||| || ||| ||||| | || ||||| || ||| || || Sbjct 134502 CCAGAGAAGAAGATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGC-AAACGTGGA 134560 Query 119661 GAC-TTGTC---GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 | | ||| || ||| |||||||||| |||||| |||||||||| || Sbjct 134561 CTCGTCGTCGGTGATCCAACGAAGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGATGGT 134620 Query 119717 TTGGATGGCTTCGAAAAG 119734 | ||||||||||| || Sbjct 134621 GTCAATGGCTTCGAAGAG 134638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975757047400