Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 seq7 93.3 5e-14 >seq13 Length=562416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 169361 CTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGAC 169420 ||| ||||| ||||| |||||||||||||| || || || |||||||| ||||||| ||| Sbjct 391603 CTTTCCACGAAGAGGGAAGACGCCATAGTGGTCGCGACCGACGACGGAAAGACCCGAGAC 391544 Query 169421 CGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA 169465 || || | ||| || ||||| || || || | ||||||||| || Sbjct 391543 TGCCAGAGCTTTGGCGGAATCTCCTTCTGTCAAAATGAGGGTGCA 391499 >seq7 Length=1099351 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||||||||| || || ||||| || || || || || ||| || || Sbjct 134396 GGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGCCC 134455 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 117391 |||||||| || |||||||| | ||| | || | ||| || || || |||||||||| Sbjct 134456 GGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCA-AAGGAGCCAGAGAAGAAGA 134514 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 | ||||| || ||||| |||| ||||||||||| || Sbjct 134515 TGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAA 134554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980556632920