Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 seq13 105 1e-17 >seq1 Length=1765974 Score = 127 bits (140), Expect = 5e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| ||||| ||||| | ||||| ||||||||||| || || |||||||| || |||| Sbjct 1745866 TGTAGTCGGCGAGAGTACGGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGGCGCTGTT 1745925 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||||||||| || || || ||||| ||||| ||| ||| ||||| || || ||||| | Sbjct 1745926 GGTCTGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAG 1745985 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| |||| ||||| || || | || || ||||| | ||||| Sbjct 1745986 ATGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1746043 Score = 118 bits (130), Expect = 2e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 ||||||| || | || | ||||||||||||||||| || || ||||| | || |||| Sbjct 1746133 TGTAATCTGCTAATGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTT 1746192 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 ||||||| || || || || |||||||| || || ||||||||| ||||| ||||| | Sbjct 1746193 GGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTG 1746252 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||| | || | |||||| || ||||| ||||| || || | ||||| Sbjct 1746253 ACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Score = 96.9 bits (106), Expect = 8e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019 || |||| ||||| | || | || || ||||||||||| || || ||||| || || | Sbjct 1746404 TACTGTAGTCGGCCAACGTGCGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCT 1746463 Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079 | || || ||||| || || || ||||| ||||| ||| ||| ||||| || || |||| Sbjct 1746464 GCTGATCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGT 1746523 Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 | || || || || || || | ||||| || |||||||| || || || | |||| Sbjct 1746524 CGGATGACTCGACCTCGAGCGTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCA 1746583 Query 195140 T 195140 | Sbjct 1746584 T 1746584 >seq13 Length=562416 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| || ||||| || || || || ||||||||||| || || ||||| | || |||| Sbjct 424283 TGTAGTCCGCAAGGGTCCTGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGTT 424224 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 | || |||||||| || || ||||||||||| || ||||||||| || || ||||||| Sbjct 424223 GATCAGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCG 424164 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || || | || | ||||| || |||| Sbjct 424163 AAGACTCGACCTCCAAAGTGATGGTCTTACCCGTCA 424128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481130897311