Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3 120 2e-22 >seq3 Length=1400765 Score = 120 bits (132), Expect = 2e-22 Identities = 237/345 (69%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 30102 ||||||||||| |||| || |||||| | | |||| ||||||||| ||| || Sbjct 1003493 TTGGGGTTCCAAGCGCTCATGATGATTCTTCGGTCTGTAGGGTTGTTCAGGATCTTGTGA 1003434 Query 30103 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTA 30161 ||| | | ||| || ||||| || ||| | |||| ||| || || | || || | || Sbjct 1003433 ACGACTTGTTGAAGTTGATCAACACCCTTGCCCGTGTAATCATCCTCGCAAGTGCCA-TA 1003375 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT--TCC 30219 || || || || |||| ||| ||||| || ||||| || || || || || || || Sbjct 1003374 TTCGGCGCCAAAGTGCCGCCATTGGAAGCCATACACTGGCCCGAGATCGCCTTCGCGTCG 1003315 Query 30220 CTGTGCTCGAAGCCCCTCTTG-TCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 || || ||||| | | ||||| || ||||| || ||||| | ||||||||| Sbjct 1003314 ATGACCT---AGCCCGGCGCGATCCAAGAACTCTCTCGACCCGTTCCCATCCCAGATCCC 1003258 Query 30279 TACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTC 30338 | |||||||| || ||| ||| | ||| || || |||||||||||| ||||| Sbjct 1003257 AATGCCCTTCTCTGACAGCAGCTTGCCATCTGTCGAGCCCGCGACGAACCACAGTAGCTC 1003198 Query 30339 CTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||| | || | ||||||||| | ||| || ||||| || || Sbjct 1003197 CTCGGCTACACCACGCCAAAAGACGCGCTTTGTAGTGAGCAGAGG 1003153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617435659109