Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 >seq1 Length=1765974 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 48606 CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCC 48665 ||| |||| || | |||||| |||||||| || || ||||| ||||| | || | ||| Sbjct 1746424 CGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCC 1746483 Query 48666 TCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACC 48725 |||||||| ||||||| ||||| | | | || || | ||| ||||| | | Sbjct 1746484 TCCTTGTCCTGAATCTTTGCCTTTACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGC 1746543 Query 48726 GTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| || ||||| |||||||| Sbjct 1746544 GTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 48606 CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCC 48665 ||| |||| || | |||||| |||||||| || || ||||| ||||| | || | ||| Sbjct 1746695 CGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATACCC 1746754 Query 48666 TCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACC 48725 |||||||| ||||||| || || | | | || || | ||| ||||| | | Sbjct 1746755 TCCTTGTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCGGATGACTCGACCTCGAGC 1746814 Query 48726 GTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||| || ||||| |||||||| Sbjct 1746815 GTGATTGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 1746855 Score = 82.4 bits (90), Expect = 6e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 48589 TGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTT 48648 ||||||| | || | ||| | || || | |||||| |||||||| |||| ||||||| Sbjct 1746133 TGTAATCTGCTAATGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGTT 1746192 Query 48649 GATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTG 48708 | || | || | ||||||||||| ||||| || || | | | |||| Sbjct 1746193 GGTCTGGTGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCTG 1746252 Query 48709 ACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| ||| || |||| || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 1746253 ACGACTCGACTTCCAAAGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATCTGCAT 1746310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937446791659