Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 178 2e-39 seq8 93.3 8e-14 >seq7 Length=1099351 Score = 178 bits (196), Expect = 2e-39 Identities = 403/597 (68%), Gaps = 17/597 (3%) Strand=Plus/Plus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| |||| || || |||| ||||||| ||||||| ||||||||| ||| Sbjct 134220 AGCAGACGATCGGCTACAAACTCAATGTATTGGCACATGAGATCACCGTTCATGCCAATG 134279 Query 48014 AGGG-ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 || ||| || |||||||| || | || |||| ||| | || ||||| || | | Sbjct 134280 AGTTTACAAGG-CAAAGCCTCGGTCAAGAATTCCTGCTCGAGCTTGACGGCCTCGACGAT 134338 Query 48073 AATCTGCTTAAC---GCGGGACTCTGAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGC 48127 || | || || || || | |||| | ||| ||||| || | |||| Sbjct 134339 GATGTTCTCGACAATGCTGGGGT--GAGGACGACGCTTG---AGGTG---GGTAAAGAGG 134390 Query 48128 ATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAG 48187 | |||||||||||| |||| | |||||||| ||| ||||||| ||||||| ||| | Sbjct 134391 AGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTG 134450 Query 48188 AGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAG 48247 || || ||||||| ||| | || ||||||||||| || | || || |||||||||||| Sbjct 134451 AGCCCGGGCATGAGCCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAG 134510 Query 48248 AAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCT 48307 ||||||||||| || || || || || | || | ||| | || | | | | ||| Sbjct 134511 AAGATGCCCTCGACGGCGGCAAAAGCAATCAGGCGCTCGGCAAACGTGGACTCGTCGTCG 134570 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC 48367 | |||||| ||| |||||||| ||||| || |||||| || || || || ||||| Sbjct 134571 GTGATCCAACGAAGAGCCCAGTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGGCT 134630 Query 48368 CGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||||| | ||| | | | |||| | ||||| || || | ||| Sbjct 134631 TCGAAGAGGTAGGTGCGGCGAGCGGGGTCCTTGATGTAGGTGTCGATCAAGAGGGAGTAG 134690 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC-AAA 48486 | |||||||| | ||||| || ||||||||| || |||||| | ||||||| | Sbjct 134691 GTTTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCATAGAAGCACTTGGCCTCGGCA 134750 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 || ||||| || | || || | ||| | || || || ||||| || ||||| || Sbjct 134751 CA-TTGCACCTCGGCTGAAAAGCGCTCGACGAGGTTTTCGTTGACGATACCATCAGA 134806 >seq8 Length=1060936 Score = 93.3 bits (102), Expect = 8e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 213777 GCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGG 213836 || ||||||||||| ||||||| || || ||| ||| | || |||||||| ||| || Sbjct 57797 GCAGGACACATGAGTGTCCAGTCACCATCCTCTTCGACGCGCTTCATGAACAAGTCGGGA 57738 Query 213837 ACCCACAGCGCGGTGAACAGGTCCC-TGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCG 213895 | ||| ||||| ||||| ||| | || | || || ||| || || ||||| Sbjct 57737 ATCCAAAGCGCATAGAACAAGTCGCGTGCGCGAACT-TCTTCCTTGCCGTGATTCTTGCG 57679 Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC 213955 || || ||||||||||||| ||| || ||||| || || | |||||||| || || || Sbjct 57678 CAAGTCGAGAAAGTCAAAGACGTCGGCATGCCAAGGTTCGAGATAGATGGCGAATGCACC 57619 Query 213956 CGGCCTCTTG 213965 || | |||| Sbjct 57618 GGGACGCTTG 57609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532415742720