Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq7 93.3 5e-14 seq4 86.0 7e-12 >seq8 Length=1060936 Score = 107 bits (118), Expect = 2e-18 Identities = 381/587 (65%), Gaps = 19/587 (3%) Strand=Plus/Plus Query 75365 TGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAG 75424 |||||||| |||||| || | ||||| ||| | || ||||| | || || | | | Sbjct 57388 TGCTTCCTGGTCGCCATGCAGCAAGACTCGATCGAAGGCATCTACGACACGCTCAAGACG 57447 Query 75425 TGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCC 75484 ||||| ||||| ||| ||| || ||||| || | |||||||| | | | | Sbjct 57448 TGTGCTATGATCTCCAAGACGGCCGGCGGTATCGGTCTCCACATCCACAACATTCGCTCA 57507 Query 75485 AATAAATCTCGTA--TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 75542 || | ||| || || || || || || | || | ||||| |||| ||||||| Sbjct 57508 AA--AGGCTCCTACATTGCCGGCACTAACGGCTACTCGAACGGTATCGTTCCCATGCTTC 57565 Query 75543 GCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGT 75596 ||| || |||| ||||| || ||||| |||||| || ||||| | ||| Sbjct 57566 GCGCATACGACGCTACAGCTCGTTATGTCGATCAAGGAGGTAACAAGCGTCCC----GGT 57621 Query 75597 CCAT-CGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGA 75655 ||| ||| |||| | ||||| ||||||||||| || | || || || || || || Sbjct 57622 GCATTCGCCATCTATCTCGAACCTTGGCATGCCGACGTCTTTGACTTTCTCGACTTGCGC 57681 Query 75656 CTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCA 75715 || || || | ||||| | ||| | || | || | | || |||||||| Sbjct 57682 AAGAATCACGGCAAGGAAGAAGTTCGCGCACGCGACTTGTTCTATGCGCTTTGGATTCCC 57741 Query 75716 GACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAG 75775 ||| | ||||||||||| || || |||| |||| | ||| | || | ||||| | | || Sbjct 57742 GACTTGTTCATGAAGCGCGTCGAAGAGGATGGTGACTGGACACTCATGTGTCCTGCCGAG 57801 Query 75776 -GCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA 75834 || || ||| | || || | | | | |||||||| || |||| |||||||| Sbjct 57802 TGCCCCGGGT-TGTCGGATGTGCACAGCGCAGAGTTTGACAAGCTTTACATCAAGTATGA 57860 Query 75835 AGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCA 75893 | ||| | | ||| ||| | | || | | | | ||||| | ||||||||| Sbjct 57861 GAATGAGATGAAGGGCAAGAAAACTAT-CAAGGCTCAAAAGCTTTGGTATGCTATTCTCG 57919 Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCT 75940 | | ||||| ||||| || || | | ||||||||||||||| Sbjct 57920 AGGCTCAGACTGAGACGGGTGGTCCTTTCCTCCTTTACAAGGATGCT 57966 >seq7 Length=1099351 Score = 93.3 bits (102), Expect = 5e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 || ||||||||||| |||| ||||| || ||||| ||||||||||| || || || Sbjct 134554 TTTGCCGAGCGCCTGATTGCTTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCTCCTT- 134496 Query 65131 TGC-GCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 ||| | || | ||| | |||||||| || |||||||| || || ||| || || || Sbjct 134495 TGCTTCCATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCCGGGCTCACCTTTTCCAACGA 134436 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || ||||| || || ||||||||| || |||||| Sbjct 134435 GCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCC 134396 >seq4 Length=1409158 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||| || || |||||| | || ||||| || ||||| || || |||||| Sbjct 957529 GGTGCCAAGATTCCTCGTGGCGCCATCCTTTCGGGTCCACCCGGTACCGGTAAAACCCTC 957588 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCAT-CCAGTGCTCTGCCGCAAA 175394 || ||| ||||| || |||||| | | ||||||||| | | || ||||| | | Sbjct 957589 CTTGCCAAAGCCACAGCTGGTGAAGCTCAGGTCCCATTCCTATCTGT-CTCTGGTTCCGA 957647 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTT 175445 ||||| || ||||| || ||||| ||| | | |||||||| ||||| Sbjct 957648 GTTTGTTGAAATGTTCGTCGGTGTCGGTCCTTCGCGCGTTCGCGACCTCTT 957698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569353915040