Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7 172 7e-37 seq8 161 1e-33 seq10 118 1e-20 >seq7 Length=1099351 Score = 172 bits (190), Expect = 7e-37 Identities = 216/288 (75%), Gaps = 9/288 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| || ||| | |||||| ||||| ||| ||||||||||| || ||||| Sbjct 134414 ACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGCCCGGGCATGAGCCCACGCTT 134473 Query 869239 CTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 ||||||||| ||||||| ||| || ||| ||||| |||||||||||||||||||||| Sbjct 134474 CTTGAGCCAGAAGATGGAAGCA-AAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAA 134532 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 | | || || ||||||||||| ||| || | || | | ||||||| | |||| Sbjct 134533 AAGCAATCAGGCGCTCGGCAAACGTG--GA-CTCGTCGTCGGTGATCCAACGAAGAGCCC 134589 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTT 869416 ||||||||||||| | | | || | ||||| ||||| ||||||| ||| | Sbjct 134590 AGTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGGCTTCGAAGAGGTAGGTGC--G 134647 Query 869417 TCG-GCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || || |||||||||| ||||||||||||| ||| || ||||| || Sbjct 134648 GCGAGCGGGGTCCTTGATGTAGGTGTCGATCAAGAGGGAGTAGGTTTC 134695 Score = 114 bits (126), Expect = 2e-19 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 19056 GGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTT 19115 ||||| || || || |||||| ||| || | || | || ||||| ||||| ||||| Sbjct 862725 GGCGGTACAGTCACATGCGTGATTCGTAATGCTCCCGTTGGTCTCGGAGAGCCATGCTTC 862784 Query 19116 GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTC 19175 |||||| |||||||| |||||||||||||||||| |||||||| ||||||||| ||| Sbjct 862785 GACAAGCTCGAGGCCAAGCTCGCCCACGCCATGCTCTCGATCCCCTCCACCAAGGCTTTC 862844 Query 19176 GAGATTGG 19183 ||||| || Sbjct 862845 GAGATCGG 862852 Score = 96.9 bits (106), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 18254 TCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCA 18313 ||||||| || || ||| ||||| ||||||| ||| | || ||||||| | || || Sbjct 862209 TCCAGTCTGGTACCGAGCACGGCGTCACGCTTGGCACACCTATCGGCCTGCTGGTACACA 862268 Query 18314 ACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTG---CCGCGGCCCTCAC 18370 || || ||||| || |||||| |||| | | | | || || || || | Sbjct 862269 ACAAGGATCAGCGTCCTCACGACTACGCCGAGAC---CGATCTCTACCCTCGTCCATCCC 862325 Query 18371 ACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGT 18430 |||| |||||||||||| | ||||||||||| ||||||| || || ||||| || || Sbjct 862326 ACGCAGACTACACCTACCTCGCCAAGTACGGACTCAAGGCTTCTTCAGGCGGCGGTCGTG 862385 Query 18431 CGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 | |||||||| || ||| | ||||| || || || || Sbjct 862386 CTTCTGCCCGAGAAACCATTGGTCGCGTAGCTGCTGGTGC 862425 Score = 95.1 bits (104), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| || ||||| |||||||| ||||| ||||||||||| | |||||||||| ||| Sbjct 134220 AGCAGACGATCGGCTACAAACTCAATGTATTGGCACATGAGATCACCGTTCATGCCAATG 134279 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || |||| | |||| ||| || || | ||||| || |||||||||||||||| Sbjct 134280 AGTTTACAAGGCAAAGCCTCGGTCAAGAATTCCTGCTCGAGCTTGACGGCCTCGACGATG 134339 Query 868931 AT 868932 || Sbjct 134340 AT 134341 >seq8 Length=1060936 Score = 161 bits (178), Expect = 1e-33 Identities = 187/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||| || || || || ||| | |||| |||||||| |||| ||||| || Sbjct 57599 TGATCGACATAACGAGCTGTAGCGTCGTATGCGCGAAGCATGGGAACGATACCGTTCGAG 57540 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||||| ||| | ||| | ||||| | | ||| Sbjct 57539 TAGCCGTTAGTGCCGGCAATGTAGGAGCCTTTTGAGCGAATGTTGTGGATGTGGAGACCG 57480 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || |||||||||| ||||||||| | || ||| |||||||||||||||||||| ||| Sbjct 57479 ATACCGCCGGCCGTCTTGGAGATCATAGCACACGTCTTGAGCGTGTCGTAGATGCCTTCG 57420 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 |||||||| || |||| | || || |||||||||||| ||| ||||| | ||||| Sbjct 57419 ATCGAGTCTTGCTGCATGGCGACCAGGAAGCACGACGAGAGTTGGGGGTGAGGGGTGCCT 57360 Query 1630306 GCGTTGAAGAGC 1630317 |||||||||||| Sbjct 57359 GCGTTGAAGAGC 57348 >seq10 Length=745633 Score = 118 bits (130), Expect = 1e-20 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 |||||||| |||| || |||| ||||| | |||||||||||| | || ||||| | | Sbjct 475894 GCCTCGGTCGCGATACGCTCGAAAATGTCATAGACAAACGAGTTGAGGATTGACATGGCC 475953 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAG 1254557 ||||||||||| || ||||||||| ||||||||||| |||||||||||| |||| | | Sbjct 475954 TTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAGATGTACGAAGCG 476013 Query 1254558 TACGA 1254562 || || Sbjct 476014 TAAGA 476018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136491865461