Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq8 91.5 1e-13 seq5 89.7 5e-13 >seq1 Length=1765974 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || |||||||| || || | || Sbjct 1746584 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746525 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||| || ||||| || || || ||||| ||||| Sbjct 1746524 GACACGATCGACAACGTAAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 1746465 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| | ||||||||||| || ||||| ||||| Sbjct 1746464 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGA 1746430 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || || || || || || | ||||| || | | Sbjct 1746310 ATGCAGATCTTTGTCAAAACCTTGACTGGCAAGACGATCACTTTGGAAGTCGAGTCGTCA 1746251 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || ||| Sbjct 1746250 GACACGATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 1746191 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||||||||||||||||| || ||||| || ||| Sbjct 1746190 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAAGAT 1746155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || |||||||| || || | || Sbjct 1746855 ATGCAGATCTTTGTCAAGACTTTGACTGGCAAGACAATCACGCTCGAGGTCGAGTCATCC 1746796 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||| || ||||| || || || ||||| ||||| Sbjct 1746795 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 1746736 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| | ||||||||||| || ||||| || || Sbjct 1746735 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGA 1746701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || |||||||| || || || | | Sbjct 1746043 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTTGAGGTCGAGTCATCT 1745984 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||| || ||||| || || || ||||| || ||| Sbjct 1745983 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCTCCAGACCAA 1745924 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || | |||||||| || || ||||| |||||| Sbjct 1745923 CAGCGCCTTATCTTTGCTGGCAAGCAGCTCGAGGAT 1745888 >seq8 Length=1060936 Score = 91.5 bits (100), Expect = 1e-13 Identities = 293/441 (66%), Gaps = 23/441 (5%) Strand=Plus/Minus Query 139360 CACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGA 139419 |||| | ||||||||||||| | ||| | || | | | | ||||||| ||||||||| Sbjct 57803 CACTCGGCAGGACACATGAGTGTCCAGTCACCATCCTCTTCGACGCGCTTCATGAACAAG 57744 Query 139420 TCCGGAATCCACAAAGCGAACAG--CAAATCGCG--CGCCTTCTTATCTTCCGAACCCAT 139475 || |||||||| ||||| | || ||| ||||| ||| ||| ||||| || | Sbjct 57743 TCGGGAATCCA--AAGCGCATAGAACAAGTCGCGTGCGCGAACTT--CTTCCTTGCCG-T 57689 Query 139476 GTTACGTTT-CATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGG 139534 | | | | || || || || ||||| ||||| || ||||| ||||| |||||||||| Sbjct 57688 GATTCTTGCGCAAGTCGAGAAAGTCAAAGACGTCGGCATGCCAAGGTTCGAGATAGATGG 57629 Query 139535 CCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATA 139591 | | ||| || || ||| || ||||||||||| | || | | | | | || Sbjct 57628 CGAATGCACCGGGACGCTTGTTACCTCCTTGATCGACATAACGAGCTGTAGCGTCGTATG 57569 Query 139592 CGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG--GGACTG 139647 |||| | ||| || | | |||| ||| ||||| |||| ||| ||| ||| Sbjct 57568 CGCGAAGCATGGGAACGATACCGTTCGAGTAGCCGTTAGTGC--CGGCAATGTAGGAGCC 57511 Query 139648 TTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAA 139707 || ||| || | || || | | || ||||| |||||| | ||||| || | | Sbjct 57510 TTTTGAG--CGAATGTTGTGGATGTGGAGACCGATACCGCCGGCCGTCTTGGAGATCATA 57453 Query 139708 ACGCA-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAG 139766 | || || | | || ||||| || ||| || ||| | |||||| | |||||| Sbjct 57452 GCACACGTCTTG-AGCGTGTCGTAGATGCCTTCGATCGAGTCTTGCTGCATGGCGACCAG 57394 Query 139767 AAAGCATGACGAAAGTTGCGG 139787 ||||| ||||| ||||| || Sbjct 57393 GAAGCACGACGAGAGTTGGGG 57373 >seq5 Length=1214282 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || ||||| || || || | || || || | | Sbjct 997827 ATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 997768 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || ||||| || || Sbjct 997767 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 997708 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||||| || || | | | | | ||||| ||| Sbjct 997707 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTTGCGGATTACAAC 997648 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || ||| | ||| | || |||| || || Sbjct 997647 ATCCAAAAGGAGTCGACCCTTCACCTCGTGCTTCGTCTGCGTGGTGG 997601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897414417240