Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holtermanniella_20nyarrowii_20[genbank_20GCA_5F001600035.1_202016- 03-01] 33 sequences; 17,735,411 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 212 1e-48 seq8 149 1e-29 seq10 120 5e-21 >seq7 Length=1099351 Score = 212 bits (234), Expect = 1e-48 Identities = 248/332 (75%), Gaps = 5/332 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| || ||| | |||||| |||| ||| ||||||||||| || ||||| Sbjct 134414 ACCTTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGCCCGGGCATGAGCCCACGCTT 134473 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| | || ||| ||||| ||||||||||||||||||||||| Sbjct 134474 CTTGAGCCAGAAGATGGAAGCAAAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAA 134533 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || ||||||||||| ||| | | || | | ||||||| | ||||| Sbjct 134534 AGCAATCAGGCGCTCGGCAAACGTGGAC---TCGTCGTCGGTGATCCAACGAAGAGCCCA 134590 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCT 794578 || |||||||| | | |||| | ||||| ||||| ||||||| ||| | | Sbjct 134591 GTCGGCCTTTTTGCGGATGCAGGGGATGGTGTCAATGGCTTCGAAGAGGTAGGTGCGGCG 134650 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | |||||||||| |||||||||||| | ||| |||||||| || ||||||||||| | Sbjct 134651 AG-CGGGGTCCTTGATGTAGGTGTCGATCAAGAGGGAGTAGGTTTCAGAGTGGATGTTCT 134709 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 | || ||||||||||||||| ||||| ||| Sbjct 134710 CCATCATGATCTGGAAGCCATAGAAGCACTTG 134741 >seq8 Length=1060936 Score = 149 bits (164), Expect = 1e-29 Identities = 184/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || |||||||| || || || ||| | |||| |||||||| || | ||||| || Sbjct 57599 TGATCGACATAACGAGCTGTAGCGTCGTATGCGCGAAGCATGGGAACGATACCGTTCGAG 57540 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||||| ||| | ||| | ||||| | | ||| Sbjct 57539 TAGCCGTTAGTGCCGGCAATGTAGGAGCCTTTTGAGCGAATGTTGTGGATGTGGAGACCG 57480 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || |||||||||| ||||||||| | || ||| | || ||||| ||||||||||| ||| Sbjct 57479 ATACCGCCGGCCGTCTTGGAGATCATAGCACACGTCTTGAGCGTGTCGTAGATGCCTTCG 57420 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 |||||||| || |||| | | ||| |||||||||||| ||| ||| | | ||||| Sbjct 57419 ATCGAGTCTTGCTGCATGGCGACCAGGAAGCACGACGAGAGTTGGGGGTGAGGGGTGCCT 57360 Query 2073781 GCATTGAAGAGC 2073792 || ||||||||| Sbjct 57359 GCGTTGAAGAGC 57348 >seq10 Length=745633 Score = 120 bits (132), Expect = 5e-21 Identities = 163/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 1485487 TTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCG 1485546 || || |||||||| || |||||| ||| || || ||| | | |||| || || || Sbjct 475777 TTTGTGCCCTCTGAAACAGCGTGCTTGGAAAGCTCACCGGGAAGAATCAAACGGACAGCC 475836 Query 1485547 GTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG-CGCCAGGCGGCCGGC 1485605 ||||| ||||| || | || || ||| | ||| || | |||||| | || Sbjct 475837 GTCTGAATCTCACGCGACGAAATGGTCGAGCGGTGGTT-GTAAGACGCCAGCTTGGAAGC 475895 Query 1485606 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTT 1485665 |||||| |||| || |||| ||||| | |||||||||||| | ||| ||||| | || Sbjct 475896 CTCGGTCGCGATACGCTCGAAAATGTCATAGACAAACGAGTTGAGGATTGACATGGCCTT 475955 Query 1485666 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||||||||| || ||||||||| ||||||||||| |||||||| Sbjct 475956 GTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTA 476000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242889639487